DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and Rxrb

DIOPT Version :10

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_006256022.2 Gene:Rxrb / 361801 RGDID:3611 Length:625 Species:Rattus norvegicus


Alignment Length:438 Identity:115/438 - (26%)
Similarity:177/438 - (40%) Gaps:119/438 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 PAASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRN 86
            |.|..|:     |.:|.|.|||||||:|:|:||.|||||:||:...|.|:..|.  |.|||..||
  Rat   286 PGAGKRL-----CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD--CTVDKRQRN 343

  Fly    87 QCRACRLRKCFEVGMNKDAVQHERGPRNSTLRRHMAMYKDA-MMGAGEMPQ-------IPAEILM 143
            :|:.||.:||...||.::|||.|         |.....||. ..|||..|:       :.||:.:
  Rat   344 RCQYCRYQKCLATGMKREAVQEE---------RQRGKDKDGDGDGAGGAPEEMPVDRILEAELAV 399

  Fly   144 NTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPT 208
            ...:..|..|     ||....:|..                        |:.||           
  Rat   400 EQKSDQGVEG-----PGGTGGSGSS------------------------PNDPV----------- 424

  Fly   209 AAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFF 273
                                 .:|.:.|.:.||..|.|.|.:..|:.||:.||::||...|.|..
  Rat   425 ---------------------TNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 468

  Fly   274 ILAMAQYLMPMN----FAQLLFVYESENANREIMGMVTREV-HAFQEVLNQLCHLNIDSTEYECL 333
            |.:.:...:.:.    .|..|.|:.:...:..:..:..|.: ....|:::::..:.:|.||..||
  Rat   469 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCL 533

  Fly   334 RAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQR 398
            |||.||                             :.:::||...|:|..:.....::|..|.::
  Rat   534 RAIILF-----------------------------NPDAKGLSNPGEVEILREKVYASLETYCKQ 569

  Fly   399 THPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDM 446
            .:|.|..||..||..:..:..:....:|.|||.|.|||..|...:.:|
  Rat   570 KYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 42/91 (46%)
NR_LBD 215..436 CDD:472173 50/225 (22%)
RxrbXP_006256022.2 None

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