DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tll and usp

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster


Alignment Length:512 Identity:115/512 - (22%)
Similarity:192/512 - (37%) Gaps:161/512 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MDQKYNSVRLSPAASSRILY----------HVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRS 65
            |.|..||...|.||:.:..|          |: |.:|.|.:||||||:|:|:||.|||||::|:.
  Fly    72 MAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKD 135

  Fly    66 RQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQHE--RGPRNSTLRRHMAMYKDAM 128
            ..|.|:..:.  |::||..||:|:.||.:||...||.::|||.|  ||.||:             
  Fly   136 LTYACRENRN--CIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNA------------- 185

  Fly   129 MGAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSA-------AAVLD 186
              ||.:           :|..|....|..:.|...:.|.....::......:.       :...|
  Fly   186 --AGRL-----------SASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRD 237

  Fly   187 LSVPRV----------------------PHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAA 229
            .|:.|:                      |:..|...:.|..|.....:|                
  Fly   238 FSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVN---------------- 286

  Fly   230 EHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMA---------------- 278
                    :.||:.|.:.:.:..|.::|:.||::||:.:|.|..|..:|                
  Fly   287 --------KQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGG 343

  Fly   279 ---------QYLMPMNFAQLLFVYESENANREIMGMVTREVHA-FQEVLNQLC----HLNIDSTE 329
                     :...|....|.||:.:|.:.:|.  ..:...|.| |..:|::|.    .||:|..|
  Fly   344 GGLGHDGSFERRSPGLQPQQLFLNQSFSYHRN--SAIKAGVSAIFDRILSELSVKMKRLNLDRRE 406

  Fly   330 YECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHN 394
            ..||:||.|:                             :.:.||:....::........:.|..
  Fly   407 LSCLKAIILY-----------------------------NPDIRGIKSRAEIEMCREKVYACLDE 442

  Fly   395 YIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELF-FRKTIGDITIVRLISDMYSQR 450
            :.:..||....||..||..:..:..:|....:.|| ||     ||..|.:.:::.::
  Fly   443 HCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFR-----ITSDRPLEELFLEQ 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 43/103 (42%)
NR_LBD 215..436 CDD:416257 47/251 (19%)
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 37/78 (47%)
NR_LBD_RXR_like 237..480 CDD:132741 53/297 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444765
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X118
43.940

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