Protein Alignment tll and Hnf4a

DIOPT Version :9

• Sequence 1: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Sequence 2: XP_006235577.1
• Gene: Hnf4a / 25735
• RGDID: 2810
• Length: 484
• Species: Rattus norvegicus
• Alignment Length: 433
• Identity: 114/433 - (26%)
• Similarity: 173/433 - (39%)
• Gaps: 139/433 - (32%)

  Fly    34 CKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFE 98
            |.:|.|.::|||||..:||||.|||:||:|::..|.|:..:|  |||||..|||||.|||:|||.
  Rat    60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQ--CVVDKDKRNQCRYCRLKKCFR 122

  Fly    99 VGMNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQI----PAEILMN--TAALTGFPGVPMP 157
            .||.|:|||:|| .|.||.|   :.|:|:     .:|.|    .||:|..  |:.::|..|
  Rat   123 AGMKKEAVQNER-DRISTRR---SSYEDS-----SLPSINALLQAEVLSQQITSPISGING---- 174

  Fly   158 MPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPP 222
                                        |:...|:.:
  Rat   175 ----------------------------DIRAKRIAN---------------------------- 183

  Fly   223 TPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQ-------- 279
                  ...:.|:..|.|...|.|.|.:.||.||.:.||:.||.....|..:|...:
  Rat   184 ------ITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDV 242

  Fly   280 ------YLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISL 338
                  |::|.:..:|      ...:|..:.::...|..|||       |.||..||.||:||..
  Rat   243 LLLGNDYIVPRHCPEL------AEMSRVSIRILDELVLPFQE-------LQIDDNEYACLKAIIF 294

  Fly   339 FRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQ 403
            |                             ..:::||.:.||:..:.:..:.:|.:||.......
  Rat   295 F-----------------------------DPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDS 330

  Fly   404 PMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDM 446
            ..||..||.::..:..::...||::.|.|..|...|..|:.:|
  Rat   331 RGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	47/82 (57%)
		NR_LBD	215..436	CDD:416257	49/234 (21%)
Hnf4a	XP_006235577.1	NR_DBD_HNF4A	60..135	CDD:143518	45/77 (58%)
		NR_LBD_HNF4_like	151..373	CDD:132729	61/329 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910