Protein Alignment tll and Rarb

DIOPT Version :9

• Sequence 1: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Sequence 2: XP_017455067.1
• Gene: Rarb / 24706
• RGDID: 3535
• Length: 455
• Species: Rattus norvegicus
• Alignment Length: 448
• Identity: 111/448 - (24%)
• Similarity: 175/448 - (39%)
• Gaps: 121/448 - (27%)

  Fly     4 SEGSPDMMD-QKYNSVRLSPAASSRI---LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRR 64
            |..||..:: |..:|..|.|:..|.:   ..:.||.||:|.|||.|||:.||:||.|||:|||::
  Rat    54 STPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQK 118

  Fly    65 SRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQHERGPRNSTLRRHMAMYKDAMM 129
            :..|.|...|.  ||::|..||:|:.|||:|||||||:|::|:::|..:..
  Rat   119 NMIYTCHRDKN--CVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK-------------- 167

  Fly   130 GAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPH 194
                                                  .|:.....:.....|.:.||:
  Rat   168 --------------------------------------EPSKQECTESYEMTAELDDLT------ 188

  Fly   195 HPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAAEH-----------IKETAAEHLFKNVNWIK 248
            ..:.:.|...| |:...:....|.:        :|:|           ..|.|.:.:.|.|.:.|
  Rat   189 EKIRKAHQETF-PSLCQLGKYTTNS--------SADHRVRLDLGLWDKFSELATKCIIKIVEFAK 244

  Fly   249 SVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMP----MNFAQLLFVYESENANREIMGMVTRE 309
            .:..||.|.:.||:.||:.:..:..||.:.....|    |.|:..|.:..::..|.. .|.:|..
  Rat   245 RLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG-FGPLTDL 308

  Fly   310 VHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRG 374
            |..|   .|||..|.:|.||...|.||.|.                             ..:.:.
  Rat   309 VFTF---ANQLLPLEMDDTETGLLSAICLI-----------------------------CGDRQD 341

  Fly   375 LLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRK 432
            |.|..||..:......||..||::..||:|..|..:|..:..:..:|:...|.:...|
  Rat   342 LEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLK 399

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	44/94 (47%)
		NR_LBD	215..436	CDD:416257	53/233 (23%)
Rarb	XP_017455067.1	NR_DBD_RAR	82..166	CDD:143522	43/85 (51%)
		NR_LBD_RAR	186..416	CDD:132735	58/262 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910