Protein Alignment tll and Rara

DIOPT Version :9

• Sequence 1: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Sequence 2: XP_017452499.1
• Gene: Rara / 24705
• RGDID: 3534
• Length: 462
• Species: Rattus norvegicus
• Alignment Length: 427
• Identity: 103/427 - (24%)
• Similarity: 165/427 - (38%)
• Gaps: 119/427 - (27%)

  Fly    21 SPAASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHR 85
            ||....||  :.||.||:|.|||.|||:.||:||.|||:|||:::..|.|...|.  |:::|..|
  Rat    77 SPPPLPRI--YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN--CIINKVTR 137

  Fly    86 NQCRACRLRKCFEVGMNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTG 150
            |:|:.|||:|||||||:|::|:::|..:..                 |.|:
  Rat   138 NRCQYCRLQKCFEVGMSKESVRNDRNKKKK-----------------ETPK-------------- 171

  Fly   151 FPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNAL 215
                              |....::...|....:::         .|.:.|...| |....:...
  Rat   172 ------------------PECSESYTLTPEVGELIE---------KVRKAHQETF-PALCQLGKY 208

  Fly   216 ATRALPPTPPLMAAEH-----------IKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESW 269
            .|.        .::|.           ..|.:.:.:.|.|.:.|.:..||.|.:.||:.||:.:.
  Rat   209 TTN--------NSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 265

  Fly   270 KEFFILAMAQYLMP----MNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEY 330
            .:..||.:.....|    |.|:..|.:..::..|.. .|.:|..|.||   .|||..|.:|..|.
  Rat   266 LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG-FGPLTDLVFAF---ANQLLPLEMDDAET 326

  Fly   331 ECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNY 395
            ..|.||.|.                             ..:.:.|.:..||..:......||..|
  Rat   327 GLLSAICLI-----------------------------CGDRQDLEQPDKVDMLQEPLLEALKVY 362

  Fly   396 IQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRK 432
            :::..||:|..|..:|..:..:..:|:...|.:...|
  Rat   363 VRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLK 399

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	44/91 (48%)
		NR_LBD	215..436	CDD:416257	49/233 (21%)
Rara	XP_017452499.1	NR_DBD_RAR	82..166	CDD:143522	44/87 (51%)
		NR_LBD_RAR	186..416	CDD:132735	53/265 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910