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Protein Alignment tll and Rorc

DIOPT Version :9

Sequence 1:	NP_524596.1	Gene:	tll / 43656	FlyBaseID:	FBgn0003720	Length:	452	Species:	Drosophila melanogaster
Sequence 2:	NP_035411.2	Gene:	Rorc / 19885	MGIID:	104856	Length:	516	Species:	Mus musculus

Alignment Length:	517	Identity:	107/517 - (20%)
Similarity:	174/517 - (33%)	Gaps:	142/517 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKC 96
            :|||:|.|.|||.|||:..|:||.|||:||.:.:..|.|..|:.  |.:|:|.||:|:.|||:||
Mouse    29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN--CPIDRTSRNRCQHCRLQKC 91

  Fly    97 FEVGMNKDAVQHER--------------------------------GPRNSTLRRHMAMYKDAMM 129
            ..:||::|||:..|                                |.|.:....:.....|..:
Mouse    92 LALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQQQQQEQVAKTPPAGSRGADTLTYTLGLSDGQL 156

  Fly   130 GAGEMPQIP---------------AEILMNTAALTGFPGVPMPMPGLPQRA-------------- 165
            ..|..|.:|               .....||.|.|...|....:...|:|.
Mouse   157 PLGASPDLPEASACPPGLLRASGSGPPYSNTLAKTEVQGASCHLEYSPERGKAEGRDSIYSTDGQ 221

  Fly   166 ------------GHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATR 218
                        ..||......|.|.|.......|.|.||:..:....:...:...::......|
Mouse   222 LTLGRCGLRFEETRHPELGEPEQGPDSHCIPSFCSAPEVPYASLTDIEYLVQNVCKSFRETCQLR 286

  Fly   219 ---ALPPTPPLMAAEHIK-----------ETAAEHLFKNVNWI----KSVRAFTELPMPDQLLLL 265
               .|.....|.:.|.:.           |..|.||.:.:.::    |.:..|.||...||::||
Mouse   287 LEDLLRQRTNLFSREEVTSYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILL 351

  Fly   266 EESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM-----GMVTREVHAFQEVLNQLCHLNI 325
            :....|..::.|.:.....|..   ..:|.:....|:.     ..:...:..|...|:.||....
Mouse   352 KAGAMEVVLVRMCRAYNANNHT---VFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSED 413

  Fly   326 DSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARS 390
            :...|..|                       :|..:..|         ||.|..:|..:..:...
Mouse   414 EIALYTAL-----------------------VLINANRP---------GLQEKRRVEHLQYNLEL 446

  Fly   391 ALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFT---IEELFFRKTIGDITIVRLISDMYSQ 449
            |.|:::.:||.      |.||..:....|:.|..   :|:|...:.:..|.:......:|.:
Mouse   447 AFHHHLCKTHR------QGLLAKLPPKGKLRSLCSQHVEKLQIFQHLHPIVVQAAFPPLYKE 502

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.