DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and nhr-141

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001023845.2 Gene:nhr-141 / 184926 WormBaseID:WBGene00017787 Length:433 Species:Caenorhabditis elegans


Alignment Length:463 Identity:89/463 - (19%)
Similarity:147/463 - (31%) Gaps:184/463 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 CKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLC-----VVDKTHR---NQCRA 90
            |.||...::|.||.:.:|:||..||:|        :|.|:|...|     ..|.|.|   .:|||
 Worm    43 CSVCGKKATGYHYDVPSCNGCKTFFRR--------ICISEKTMQCQGVGDCFDLTKRIAPVKCRA 99

  Fly    91 CRLRKCFEVGMNKDAVQHERGPRNSTLRRHMAMYKD---------AMMGAGEMPQIPA------- 139
            ||..||...|||.:|:|.:....::...:|:...|:         :|.....:..|.|       
 Worm   100 CRFEKCVLKGMNPNAMQIDEKEESAKNYKHLKKLKNQYCQKDSEHSMEKKQTINSIDAIETKMQK 164

  Fly   140 --------EILMNTAALTGF----PGVPM------------------PMPGLPQRAGHHPAHMAA 174
                    ||.:....|:.:    ..:|.                  ||||.|.:.         
 Worm   165 LVDALSYLEIKLRKFRLSAYNPHWSTIPCLEEFLLLENKICLADKSGPMPGWPLKT--------- 220

  Fly   175 FQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEH 239
             ||.|          |::|....:.....:|.....::                        ...
 Worm   221 -QPAP----------PKIPEFRNNPSGRPYFPDKKTWL------------------------LYD 250

  Fly   240 LFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY--------------------LMPM 284
            |..::.:.|:...|.:|...|:|:|:     .:..||:...                    |.||
 Worm   251 LMVSIEYAKTFMFFHQLGTRDRLILM-----RYVSLALMNLHISYFTVAKKFDTIIHPDGSLAPM 310

  Fly   285 NFAQLLFVYESENANREIMGMVTREVHAFQEVLNQ--LCHLNIDSTEYECLRAISLFRKSPPSAS 347
            |                 .|||..|.     |::.  |...||...||..|:||.|...:.|..|
 Worm   311 N-----------------KGMVYAET-----VMSMAPLIRCNIQEIEYILLKAICLCNPAVPELS 353

  Fly   348 STEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDA-RSALHNYIQRTHPSQPMRFQTLL 411
            :                            .:.|:.|...:. ..||.::..|:..:.|.:|..|:
 Worm   354 T----------------------------HAQKILAKEREQYADALFDHCIRSRTNGPAQFAELI 390

  Fly   412 GVVQLMHK 419
            .:|.::.:
 Worm   391 SMVDILER 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 31/90 (34%)
NR_LBD 215..436 CDD:416257 38/228 (17%)
nhr-141NP_001023845.2 NR_DBD_HNF4A 43..119 CDD:143518 31/83 (37%)
HOLI 249..399 CDD:214658 38/205 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158227
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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