DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and nhr-152

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_504990.2 Gene:nhr-152 / 182533 WormBaseID:WBGene00015705 Length:383 Species:Caenorhabditis elegans


Alignment Length:464 Identity:100/464 - (21%)
Similarity:172/464 - (37%) Gaps:136/464 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSPAASSRIL-YHVP--CKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVV- 80
            |...|::.|| :..|  ||:|...:.|.|..:..|.||..||:      |.|:.||:.:  |.: 
 Worm     4 LHQVANNSILKFPSPFNCKICNRPAHGHHCDVATCKGCKTFFR------RMYLLKSELR--CYIN 60

  Fly    81 ----DKTHRNQ----CRACRLRKCFEVGMNKDAVQHERGPRNST--LRR----------HMAMYK 125
                |...|.:    |||||.:||..||||.:|:.. |..:|.|  |:.          :...|.
 Worm    61 SDCFDLDKRTEPLLRCRACRFKKCLLVGMNPNALNF-RTTKNLTQSLKNSKEEKIKDVINELTYL 124

  Fly   126 DAMMGAGEMPQIPA-----------EILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPP 179
            |..:   |..::.|           |.|:..::.........|.||.|    :||.|:       
 Worm   125 DCKL---EQFRLSAYNPNWTEIGGLEDLLRCSSKLSLSNKFGPFPGWP----YHPNHI------- 175

  Fly   180 SAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNV 244
            .|::.||.:...             :||                       |.|:....:|..::
 Worm   176 FASSNLDYNFKT-------------YSP-----------------------HRKQWRFFNLLTSI 204

  Fly   245 NWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTRE 309
            .::|:...|.:|...|||:|:.........|..|.|.:...:..|.....::...:.     ..:
 Worm   205 EFLKTFPFFLKLDTKDQLILMRHVVVGCSNLHSAYYTLKNKYEDLRQPDGTQRPKKS-----EPQ 264

  Fly   310 VHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRG 374
            ...|..|...|..:.:...||..|:.|.              :.|.:|      ||.|::|:.: 
 Worm   265 YSTFAMVFYALMRVGVHYIEYLLLKMIF--------------ICNPAI------PNLSSNAQYK- 308

  Fly   375 LLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITI 439
             ||.|:  :.:::  ..|...:|..:.|.|.|:..|:||:..:.|.          :|.:.|:.:
 Worm   309 -LEKGR--SFYSE--MLLVYCLQSLNSSGPTRYVDLIGVIATLEKQ----------QKLLKDLHV 358

  Fly   440 VRLISDMYS 448
            . |::.|.|
 Worm   359 C-LLAPMLS 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 35/105 (33%)
NR_LBD 215..436 CDD:416257 40/220 (18%)
nhr-152NP_504990.2 ZnF_C4 20..92 CDD:197701 28/79 (35%)
HOLI 197..349 CDD:214658 36/182 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158232
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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