DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tll and nhr-60

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_506930.1 Gene:nhr-60 / 180059 WormBaseID:WBGene00003650 Length:443 Species:Caenorhabditis elegans


Alignment Length:466 Identity:101/466 - (21%)
Similarity:157/466 - (33%) Gaps:156/466 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SPAA--SSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKT 83
            ||.|  |::......|.:|.:.::|.||.:.:|:||..||:|.....|.:.||:  :|.| .|.|
 Worm    32 SPTAVKSTKPQRPTECLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFECKA--KGDC-FDLT 93

  Fly    84 HRN---QCRACRLRKCFEVGMNKDAVQ-HERGPRNSTLRR---------------------HMAM 123
            .|.   :|||||.:||..||||..|:: .|:...:|..::                     .|.:
 Worm    94 KRKVPLKCRACRHQKCISVGMNPLAMEVDEKAASSSNFKKLVKRAQDLEPDDDCQVTAVVNKMQI 158

  Fly   124 YKDAMMGAGEMPQIP---------------------------AEILMNTAALTGFPGVPMPMPGL 161
            .|.......:|..|.                           .|.|:.:....||.....||||.
 Worm   159 VKPVDSIESKMQNITDMLVYLETKVERFRKSAYNPHWNEFSGLEYLLESECRIGFGDRFGPMPGW 223

  Fly   162 PQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPPTP-- 224
            |.|..                   .|..||:|.                          ||:|  
 Worm   224 PLRRD-------------------QLGPPRLPK--------------------------PPSPGK 243

  Fly   225 --PLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFA 287
              ....:::||:....:|...|.:.|:...|..|...|:|:|...       :|:|       ..
 Worm   244 PRDSQHSQNIKQWFFYNLLTTVEYAKTFMFFHRLSSRDKLILTRH-------VALA-------CT 294

  Fly   288 QLLFVYESENANREIM-------GMVTREVHAFQEVLN--QLCHLNIDSTEYECLRAISLFRKSP 343
            .|...|.|...|.|::       .|...:.|....|::  .|....|.:.||..|:||       
 Worm   295 NLHISYSSIRRNLEVIIEPDGSEPMTFNDTHYSASVMSVAPLIRCQIKNIEYLLLKAI------- 352

  Fly   344 PSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQ 408
                         :|.....|:.||.::....||..|.|       .||.||..|:....|..|.
 Worm   353 -------------VLCNPAVPDLSAKSQEIISLERVKYA-------DALFNYCLRSRSDGPPHFA 397

  Fly   409 TLLGVVQLMHK 419
            .|:.::.::.:
 Worm   398 QLIQIIDVLER 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 34/95 (36%)
NR_LBD 215..436 CDD:416257 46/218 (21%)
nhr-60NP_506930.1 ZnF_C4 47..117 CDD:197701 30/72 (42%)
HOLI 257..409 CDD:214658 41/193 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158223
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.