DRSC/TRiP Functional Genomics Resources

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Protein Alignment cindr and Sh3pxd2b

DIOPT Version :10

Sequence 1:NP_001263129.1 Gene:cindr / 43654 FlyBaseID:FBgn0027598 Length:941 Species:Drosophila melanogaster
Sequence 2:XP_006514775.1 Gene:Sh3pxd2b / 268396 MGIID:2442062 Length:936 Species:Mus musculus


Alignment Length:893 Identity:179/893 - (20%)
Similarity:277/893 - (31%) Gaps:302/893 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IVEYEYAAKEPDELDLQKGAIIHRIKQMPGGWW-------QGTLKASGVTGM--FPDNFVRVLES 63
            :|..:|..:|..|:.|..|.::..|::...|||       ||.:.|:.:.|.  ..|.|....|.
Mouse   158 VVVADYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPEE 222

  Fly    64 GVSSNGNGTTGSGDHIEVGTAVQLRDKSATSNR---RCKVIYSYTQVNDDELTLAVGDVIEFLGE 125
             ||........|     ||....|.|..|.|.|   :..|||.||..:.||:.|..|.|:|.:.:
Mouse   223 -VSWRYCSLPRS-----VGRRRTLGDLYAISWRQEEKYTVIYPYTARDQDEMNLERGAVVEVVQK 281

  Fly   126 VEEGWWRGRLRSKVGVFPSNFVQHIEPSPVLASKRPPTIGATVTTSALTSKAANVANVAATATVP 190
            ..||||:.|.:.|.|..|:::::.....|:     ||.:|   .:|...|.|.::..|:......
Mouse   282 NLEGWWKIRYQGKEGWAPASYLKKNSGEPL-----PPKLG---PSSPAHSGALDLDGVSRHQNAM 338

  Fly   191 ---------------TGGAVPPASTSISTSTTKQATKSRATAAAAASAPAEPAAIVSGSGAAAGG 240
                           .|..||...           .|.|:........|.....|..|.....  
Mouse   339 GREKELLNNQRDGRFEGRLVPDGD-----------VKQRSPKMRQRPPPRRDMTIPRGLNLPK-- 390

  Fly   241 GAAAAVPMLPPKPQREFCRVEFPYAPQNDDELELKVDDII---AVISTELPDK---GWWKGEIRG 299
                  |.:||:.:.|:..:.         |.:..:.|.|   |.:..|:.:|   |||..::..
Mouse   391 ------PPIPPQVEEEYYTIA---------EFQTTIPDGISFQAGLKVEVIEKSLSGWWYIQMED 440

  Fly   300 KVGVFPDNFVKMLAPSEATAAP----PLPRPRPRTRPG--------MGGTGAG-------SGSGI 345
            |.|..|..|:.....:.:.:.|    |||....:.|.|        .|....|       :..|.
Mouse   441 KEGWAPATFIDKYKKTSSASRPNFLAPLPHEMTQLRLGDAAATENNTGPEAVGPSRPLPEAPHGA 505

  Fly   346 IDGVRTPRRTQRGGSFEFLGARMASFITTIFAPINEPPSATQITQNQRKVSNTASTTSHMTTTNS 410
            :|......:..:||                    .|.|         ||.|:..|.        |
Mouse   506 VDSGMLWSKDWKGG--------------------KEAP---------RKASSDLSA--------S 533

  Fly   411 SNSSTTSVTTQQQKEQIGGSSSTTSKVYIKKTGSSSNSTTSSTTTASSSAGRKESFGSRDSLNDI 475
            :.....|..||::|                                .|...||||.        |
Mouse   534 TGYEEISDPTQEEK--------------------------------PSLPPRKESI--------I 558

  Fly   476 LSETGLPTGNVAAQRKSLENKNLDLTKPPGV--------GASVSIGQQRSSTSSATTSSATTVAT 532
            .||..|    :..:|:.:|.......||||:        .|.::...::.......:........
Mouse   559 KSEEEL----LERERQKMEPLRGSSPKPPGMILPMIPAKHAPLARDSRKPEPKLDKSKFPLRNDM 619

  Fly   533 GLTSS--------------SVSKSMENMLDEKVKSPPPPVLSK-KPSVPLKKTPTGGVPMT---- 578
            ||...              .:|:|...:.:|||......:..| :|.|..|.||:   |.|    
Mouse   620 GLECGHKVLAKEVKKPNLRPISRSKAELSEEKVDPTSQNLFMKSRPQVRPKPTPS---PKTEPAQ 681

  Fly   579 ---------------------GNLLGGKKKNTEGKLTTAVSHDL--ADGLAASKMLSGANQLPES 620
                                 ..||.|:..:..|...||:|...  .:|....:..||.    :.
Mouse   682 SEDHVDIYNLRSKLRPAKSQEKALLDGESHHAAGSHDTALSRSFLPGEGPGHGQDRSGR----QD 742

  Fly   621 GAAGNVVIRRAATIAVEDTDFD------RVERASILTDMRQGRVKAPKRRPP------SAAIN-- 671
            |.:......||.....:.||..      .|:.|::     |.|...|.||||      |:.::  
Mouse   743 GLSPKETPCRAPPRPAKTTDPGPKNVPVPVQEATL-----QQRPVVPPRRPPPPKKTSSSPLSCR 802

  Fly   672 ----VLGESNNNSVYVNGSG----------------------MSGSGGAG-------------SA 697
                |.|.....|.....:|                      |.|.||.|             :|
Mouse   803 PLPEVRGAQREESRVAPAAGRALLVPPKAKPFLSNSSVGQDDMRGKGGLGPRVTGKVGETREKAA 867

  Fly   698 SELSEDGG--------AGGKTSDDNSTGEEPQLAKPKPREWEKKKAPW 737
            |.|:.||.        |..:..:|.|:.:|..:.:.:    ||..:.|
Mouse   868 SFLNADGPKDSLYVAVANFEGDEDTSSFQEGTVFEVR----EKNSSGW 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cindrNP_001263129.1 SH3_CD2AP-like_1 6..60 CDD:212806 16/60 (27%)
SH3_CD2AP-like_2 97..149 CDD:212807 19/51 (37%)
SH3_CD2AP-like_3 258..310 CDD:212808 13/57 (23%)
Sh3pxd2bXP_006514775.1 PX_FISH 7..125 CDD:132798
SH3_Tks4_1 155..209 CDD:213008 13/50 (26%)
SH3_Tks4_2 252..305 CDD:213009 19/52 (37%)
SH3_Tks4_3 400..452 CDD:213011 14/60 (23%)
SH3_Tks4_4 879..934 CDD:212951 7/37 (19%)
Blue background indicates that the domain is not in the aligned region.

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