DRSC/TRiP Functional Genomics Resources

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Protein Alignment cindr and sh3d21

DIOPT Version :9

Sequence 1:NP_001263129.1 Gene:cindr / 43654 FlyBaseID:FBgn0027598 Length:941 Species:Drosophila melanogaster
Sequence 2:XP_004911622.2 Gene:sh3d21 / 100145355 XenbaseID:XB-GENE-5889544 Length:552 Species:Xenopus tropicalis


Alignment Length:696 Identity:155/696 - (22%)
Similarity:254/696 - (36%) Gaps:212/696 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IVEYEYAAKEPDELDLQKGAIIHRIKQ-MPGGWWQGTLKASGVTGMFPDNFVRVLESGVSSNG-- 69
            :|..::..:..|||.::.|.:|..:|: ...||.:|.||  |..|.||..||:.:.....::.  
 Frog     8 LVLVDFKGQLDDELKIKAGDVIQNVKKTAEEGWLEGELK--GKRGFFPQMFVKEIPPFFLNDSAQ 70

  Fly    70 -------------------NGTTGSGDHIEVGTAVQLRDKSATSNRRCKVIYSYTQVNDDELTLA 115
                               .|.......|:.|.|...:.|     |.|:|.|:|...:.|||.|:
 Frog    71 RYPRSIRKPNASMVPQIPQEGPPEKQTPIDDGYARVNKKK-----RWCRVEYAYKASSADELELS 130

  Fly   116 VGDVIEFLGEVEEGWWRGRLRSKVGVFPSNFVQHIEPSPVLASKRPPTIGATVTTSALTSKAANV 180
            ||:|.:.|.|:|:|||.|:....||.||||||:.:...|   |::.|.:          ||.|..
 Frog   131 VGEVFQVLEEIEDGWWLGKKGEAVGAFPSNFVKEVPEPP---SEKIPEL----------SKNAKK 182

  Fly   181 ANVAATATVPTGGAVPPASTSISTSTTKQATKSRATAAAAASAPAEPAAIVSGSGAAAGGGAAAA 245
            .               ||...|:.|..::....:...:...:...|.::                
 Frog   183 R---------------PAMMDINFSAKEEEKSKQEDKSVPENQSKEDSS---------------- 216

  Fly   246 VPMLPPKPQREFCRVEFPYAPQNDDELELKVDDIIAVISTELPDKGWWKGEIRGKVGVFPDNFVK 310
                 |...:|:|||.|.|.|...|||.||..|:|.:||.|..|:|||:||..||.|:||||||.
 Frog   217 -----PPHAKEYCRVMFDYKPFLPDELALKKGDVILLISKETGDEGWWQGEHNGKTGLFPDNFVL 276

  Fly   311 MLAPSEATAAPPLPR-----PRPRTRPGMGGTGAGSGSGIIDGVRTPRRTQRGGSFEFLGARMAS 370
            ::.|........||.     ..|.|:         |...|:|  :.|...::..           
 Frog   277 IIPPDMQIKTNKLPTRTSTIKSPVTK---------SDLNIMD--KKPHEVKKPA----------- 319

  Fly   371 FITTIFAPINE-PPSATQITQNQRKVSNTASTTSH----------MTTTNSSNSSTTSVTTQQQK 424
                  |.:|: .|:.|:..|.:.|...:...|:.          :..:...|:...:..:.:..
 Frog   320 ------AEVNKHEPTTTKKGQREPKTDLSPKVTNQPGKKAAPPPPVPKSAKHNTGPLNKPSTEAG 378

  Fly   425 EQIGGSSSTTSKVYIKKTGSSSNSTTSSTTTASSSAGRKESFGSRDSLNDILSETGLPTGNVAAQ 489
            |.:..||        |::.:......||...|..:|.|.:..|.|           ||.|.|.:.
 Frog   379 EDVNHSS--------KESNTLDGLRVSSMKLAHPTADRPKMMGKR-----------LPKGKVTSP 424

  Fly   490 RKSL----ENKNLDLTKPPGVGASVSIGQQRSSTSSATTSSATTVATGLTSSSVSKSMENMLDEK 550
            .|.:    :.||                 :....|.:..|||..                  |.:
 Frog   425 EKPISESDDKKN-----------------EEQVNSHSKVSSAPK------------------DPR 454

  Fly   551 VKSPPPPVLSKKPSVPLKKTPTGGVPMTGNLLGGKKKNTEGKLTT--AVSHDLADGLAASKMLSG 613
            :.:.|.|    .|| |.|.:|..  |:..:.:...:|..:...::  ::..|||..:|:.|.:. 
 Frog   455 IPTTPSP----SPS-PTKTSPLS--PLATSTVKQSQKTADNHASSVQSLQEDLAAEIASIKFMM- 511

  Fly   614 ANQLPESGAAGNVVIRRAATIAVEDTDFDRVERASILTDMRQGRVK 659
                        .::|...|..:||          |.:::.:.|.|
 Frog   512 ------------ELLRNKHTKDMED----------IRSELNEERTK 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cindrNP_001263129.1 SH3_CD2AP-like_1 6..60 CDD:212806 18/52 (35%)
SH3_CD2AP-like_2 97..149 CDD:212807 26/51 (51%)
SH3_CD2AP-like_3 258..310 CDD:212808 30/51 (59%)
sh3d21XP_004911622.2 SH3 6..59 CDD:418401 18/52 (35%)
SH3_CD2AP-like_2 112..164 CDD:212807 26/51 (51%)
SH3_D21-like 223..277 CDD:213018 31/53 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1577081at2759
OrthoFinder 1 1.000 - - FOG0002275
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1165
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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