DRSC/TRiP Functional Genomics Resources

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Protein Alignment zfh1 and znf1004

DIOPT Version :9

Sequence 1:NP_733401.3 Gene:zfh1 / 43650 FlyBaseID:FBgn0004606 Length:1206 Species:Drosophila melanogaster
Sequence 2:NP_001107936.1 Gene:znf1004 / 799653 ZFINID:ZDB-GENE-080219-20 Length:934 Species:Danio rerio


Alignment Length:1122 Identity:222/1122 - (19%)
Similarity:343/1122 - (30%) Gaps:386/1122 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 FLVK--------CTQCHKRFPEYQSLSEHI---ASEHPHDKLNCGAAQPESDAEDEQSNMSGSSR 125
            ||:|        |:||.|......||..|:   ..|.|:....||.:..:|.:......:....|
Zfish    52 FLIKRKDKNCFTCSQCGKSLGRKSSLEIHMRIHTGERPYTCTQCGKSFRQSSSLTLHMTIHTGER 116

  Fly   126 RYAKSPLASNNNSSTANANNNSTSSQSMNNNSELAKNHNSANKMSPMCSPGSLTPGDLFAQLQHP 190
            .|            |......|..:.|..||..|.......:|.. .|....|...||.|..:  
Zfish   117 PY------------TCTQCGKSFMNSSNLNNHRLIHTGKKTHKCD-QCGKSFLRAADLKAHFR-- 166

  Fly   191 PPQLPPHLHAQFMAAAASLAMQSARTASSPSQQQQ--------------------QQLQQQQ--- 232
                   :|.:....:.|:..:|..|.|.....|:                    ..|::.|   
Zfish   167 -------VHTKVKPYSCSVCGKSFSTESHLRGHQKIHTGVKEYMCFECEKTFISAHHLKRHQMIH 224

  Fly   233 ----------------QLQQQQQHQMAMQQLLPPQLPGSNSSVGSNSAYDLDLSAPRSTSSPGST 281
                            :|:.|:.|:...        .|..|...|:.  |...:...|..|..:.
Zfish   225 TGEKPYKCSHCDKRFNRLESQKSHETIH--------TGEKSYKCSHC--DKRFNRLESQKSHETI 279

  Fly   282 -TGDLSGAYPCMQCTASFASREQLEQHEQLHSPCGPAAVSNVSQTCRICHKAFANVYRLQRHMIS 345
             ||:.|  |.|..|...|......:.||::|:...|       ..|..|.|.|.|:..::.|.:.
Zfish   280 HTGEKS--YKCSHCDKRFRQLRHQKIHERIHTGTKP-------YKCSHCEKTFGNLGSVKTHEMI 335

  Fly   346 HDESALLRKFKCKECDKAFK----FKHH------------------------LKEHVRIHSGEKP 382
            |...   :.:||..|||.|.    .|.|                        |:.|:|||:||||
Zfish   336 HTGE---KPYKCSHCDKRFSQLGTMKLHERIHTGEKAYTCTQCGKSLGCKSALETHMRIHTGEKP 397

  Fly   383 FGCDNCGKRFSHSGSFSSHM---TSK---KCISMG--------LKLNNNRALLKRLEKSPGSASS 433
            :.|..|||.|:.|.:...||   |.|   ||...|        |||:    |....::.|.|.|.
Zfish   398 YTCTQCGKSFTQSSNLKKHMLIHTGKKTHKCDQCGKTFLTASYLKLH----LRVHTKEKPYSCSV 458

  Fly   434 ASRRSPSDHG-KGKLPEQPSLPGLPHPMSYFASDAQVQGGS---------AAPAPFPPFHPNYMN 488
            ..:...::.| :|   .|....|:...|. |..|....|..         ....|:...|     
Zfish   459 CGKSFSTELGLRG---HQKIHTGVKEYMC-FECDKTFLGAQQLKRHKRIHTGEKPYKCSH----- 514

  Fly   489 AALLAFPHNFMAAAAGLDPRVHPYSIQRLLQLSAAGQQQRE----EEREEQ-QKQQQHDEEETPD 548
                            .|.|.:....|:..::...|::..:    ::|..| |.|:.|:...|.:
Zfish   515 ----------------CDKRFNRLESQKSHEMIHTGEKSYKCSHCDKRFSQLQNQKIHERIHTGE 563

  Fly   549 EP-------KLVMDIEEPETKEMAPTPEATEAATPIKREESREASPDPESYRSSSQAIKQEQEPL 606
            :|       |....:...:..|...|.|.....|...:...|.||                   |
Zfish   564 KPYKCLHCGKRFSQLGNMKLHERIHTGEKPYTCTQCGKSYGRSAS-------------------L 609

  Fly   607 NVAEERQTPVEEHAPVEHAADLRCSRCSKQFNHPTELVQH------EK----VLCGLIKEELEQH 661
            |......|..:.|         :|.:|.|.|...|.|..|      ||    .:||       :.
Zfish   610 NNHMLIHTGKKTH---------KCDQCGKSFLAATRLKTHLRFHTNEKPYLCPVCG-------KR 658

  Fly   662 FQQQQATSFALASASEEDEEDEEMDVEEEPRQESGERKVRVRTAINEEQQQQLKQHYSLNA--RP 724
            |.|:...|         :.:.....|:|....|..:..:|.         .|||.|.:::.  :|
Zfish   659 FAQKAYLS---------EHQKTHTGVKEYMCFECDKTFLRA---------HQLKWHQTIHTGEKP 705

  Fly   725 SRDEFRMIAARLQLDPRVVQVWFQNNRSRERKMQSFQNNQAAGAAPPMPIDSQASLTREDQPLDL 789
            .:..        ..|.|.      |...|:...:.....:                         
Zfish   706 YKCS--------HCDKRF------NRLERQTTHERIHTGE------------------------- 731

  Fly   790 SVKRDPLTPKSESSPPYIAPPSGEALNPEAINLSRKFSTSASMSPASISPSSAAALYFGAAPPPS 854
                          .||           :..:..::||..|.:                      
Zfish   732 --------------KPY-----------KCSHCGKRFSMLAHL---------------------- 749

  Fly   855 PPNSQLDSTPRSGQAFPGLPPYMLPMSLPMEALFKMRPGGDFASNHALMNSIKLP--------DY 911
                :...|..:|:     .||..           .|.|..||.:..|...:::.        |.
Zfish   750 ----KTHETIHTGE-----KPYTC-----------TRCGKSFAQSSNLYRHMRIHTGVKTHKCDQ 794

  Fly   912 RGTSLSPGGSEKRSWRDDDSRISH--EDEFGAGVLMPPKPRRGKAETHG--HAGDPDLPYVCDQC 972
            .|.:.|.....|...|      ||  |..:...|.......:.....|.  |.|..:  |:|.:|
Zfish   795 CGKTFSTASCLKIHLR------SHTKEKPYSCTVCGKSFSTQSSLRLHQKIHTGLKE--YMCFEC 851

  Fly   973 DKAFAKQSSLARHKYEHSGQRPYQCIECPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFS---- 1033
            :|.|...:.|.||:..|:|::||:|..|.|.|....:||.|:|:|:||||::||.|.|||:    
Zfish   852 EKTFISAAKLKRHQMIHTGEKPYKCSHCNKRFSELGNLTTHERIHTGEKPYKCSHCDKRFNQLKI 916

  Fly  1034 ---HSGSYSQHMNHRYS 1047
               |..|:.:...|..|
Zfish   917 LKKHEDSHKKTSTHLIS 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zfh1NP_733401.3 C2H2 Zn finger 291..311 CDD:275368 5/19 (26%)
C2H2 Zn finger 326..346 CDD:275368 6/19 (32%)
zf-C2H2 355..377 CDD:278523 11/49 (22%)
C2H2 Zn finger 357..377 CDD:275368 10/47 (21%)
zf-H2C2_2 369..391 CDD:290200 13/45 (29%)
Homeobox 703..755 CDD:278475 9/53 (17%)
C2H2 Zn finger 969..989 CDD:275368 7/19 (37%)
zf-H2C2_2 981..1006 CDD:290200 11/24 (46%)
COG5048 992..>1045 CDD:227381 23/59 (39%)
C2H2 Zn finger 997..1017 CDD:275368 8/19 (42%)
zf-H2C2_2 1009..1034 CDD:290200 15/31 (48%)
C2H2 Zn finger 1025..1042 CDD:275368 8/23 (35%)
znf1004NP_001107936.1 C2H2 Zn finger 64..84 CDD:275368 7/19 (37%)
zf-H2C2_2 76..101 CDD:290200 7/24 (29%)
COG5048 88..502 CDD:227381 98/465 (21%)
C2H2 Zn finger 92..112 CDD:275368 3/19 (16%)
C2H2 Zn finger 120..140 CDD:275368 5/19 (26%)
C2H2 Zn finger 148..168 CDD:275368 5/29 (17%)
C2H2 Zn finger 176..196 CDD:275368 5/19 (26%)
C2H2 Zn finger 204..224 CDD:275368 2/19 (11%)
zf-H2C2_2 216..241 CDD:290200 2/24 (8%)
C2H2 Zn finger 232..252 CDD:275368 3/19 (16%)
C2H2 Zn finger 260..280 CDD:275368 4/21 (19%)
C2H2 Zn finger 288..308 CDD:275368 5/19 (26%)
C2H2 Zn finger 316..336 CDD:275368 6/19 (32%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..392 CDD:275368 3/19 (16%)
zf-H2C2_2 384..409 CDD:290200 14/24 (58%)
C2H2 Zn finger 400..420 CDD:275368 8/19 (42%)
C2H2 Zn finger 428..448 CDD:275368 6/23 (26%)
C2H2 Zn finger 456..476 CDD:275368 4/22 (18%)
COG5048 480..864 CDD:227381 88/572 (15%)
C2H2 Zn finger 484..504 CDD:275368 3/20 (15%)
zf-H2C2_2 497..521 CDD:290200 4/44 (9%)
C2H2 Zn finger 512..532 CDD:275368 4/40 (10%)
C2H2 Zn finger 540..560 CDD:275368 5/19 (26%)
C2H2 Zn finger 568..588 CDD:275368 2/19 (11%)
C2H2 Zn finger 596..616 CDD:275368 6/38 (16%)
C2H2 Zn finger 624..644 CDD:275368 7/19 (37%)
C2H2 Zn finger 652..672 CDD:275368 5/35 (14%)
C2H2 Zn finger 680..700 CDD:275368 6/28 (21%)
C2H2 Zn finger 708..728 CDD:275368 4/33 (12%)
C2H2 Zn finger 736..756 CDD:275368 4/45 (9%)
C2H2 Zn finger 764..784 CDD:275368 5/30 (17%)
zf-H2C2_2 776..801 CDD:290200 3/24 (13%)
C2H2 Zn finger 792..812 CDD:275368 5/25 (20%)
C2H2 Zn finger 820..840 CDD:275368 2/19 (11%)
C2H2 Zn finger 848..868 CDD:275368 7/19 (37%)
C2H2 Zn finger 876..896 CDD:275368 8/19 (42%)
zf-H2C2_2 888..913 CDD:290200 15/24 (63%)
C2H2 Zn finger 904..924 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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