DRSC/TRiP Functional Genomics Resources

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Protein Alignment zfh1 and ro

DIOPT Version :10

Sequence 1:NP_733401.3 Gene:zfh1 / 43650 FlyBaseID:FBgn0004606 Length:1206 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:386 Identity:77/386 - (19%)
Similarity:120/386 - (31%) Gaps:159/386 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 SPGSASSASRRSPSDHGKGKLPEQPSLPG------LPHPMSYFASDAQVQGGSAAPAPFP---PF 482
            |||...|.|....::.....:|::||.|.      ..|..:..:.:.::..|:.|..|.|   |:
  Fly    14 SPGIKRSDSLDPIANTTILSVPQRPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPY 78

  Fly   483 H--------PNYM----NAALLAFP-HNFMAAAAGLDPRVHPYSIQRLLQLSAAGQQQREEEREE 534
            |        |:..    ..:|.|:| ::|...|.  |...||                      .
  Fly    79 HSDGGSVSSPDISISDERTSLAAYPAYDFYGHAK--DYPQHP----------------------S 119

  Fly   535 QQKQQQHDEEETPDEPKLVMDIEEPETKEMAPTPEATEAATPIKREESREASPDPESYRSSSQAI 599
            ||.||.|.....|  |:||                         .::....||.|        ||
  Fly   120 QQHQQHHHHHHHP--PQLV-------------------------HQKLSYVSPPP--------AI 149

  Fly   600 KQEQEPLNVAEERQTPVEEHA-PVEHAADLRCSRCSKQFNHPTELVQHEKVLCGLIKEELEQHFQ 663
                    .|.....||..|| |....:|                                .|| 
  Fly   150 --------AAGGAANPVLPHAFPAGFPSD--------------------------------PHF- 173

  Fly   664 QQQATSFALASASEEDEEDEEMDVEEEPRQESGERKVRVRTAINEEQQQQLKQHYSLNARPSRDE 728
               :..|:...|..              |::.| |:.|.||..:.||..:|:..:..|...||..
  Fly   174 ---SAGFSAFLARR--------------RRKEG-RQRRQRTTFSTEQTLRLEVEFHRNEYISRSR 220

  Fly   729 FRMIAARLQLDPRVVQVWFQNNRSRERKM------QSFQN------------NQAAGAAPP 771
            ...:|..|:|....:::||||.|::::::      |.::|            .|||...||
  Fly   221 RFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPP 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zfh1NP_733401.3 C2H2 Zn finger 291..311 CDD:275368
C2H2 Zn finger 326..346 CDD:275368
zf-H2C2_2 338..365 CDD:463886
zf-C2H2 355..377 CDD:395048
C2H2 Zn finger 357..377 CDD:275368
zf-H2C2_2 369..391 CDD:463886
Homeodomain 701..756 CDD:459649 17/54 (31%)
C2H2 Zn finger 969..989 CDD:275368
zf-H2C2_2 981..1006 CDD:463886
C2H2 Zn finger 997..1017 CDD:275368
zf-H2C2_2 1009..1034 CDD:463886
C2H2 Zn finger 1025..1042 CDD:275368
roNP_524521.1 Homeodomain 196..248 CDD:459649 15/51 (29%)
Blue background indicates that the domain is not in the aligned region.

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