DRSC/TRiP Functional Genomics Resources

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Protein Alignment zfh1 and pb

DIOPT Version :10

Sequence 1:NP_733401.3 Gene:zfh1 / 43650 FlyBaseID:FBgn0004606 Length:1206 Species:Drosophila melanogaster
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:654 Identity:146/654 - (22%)
Similarity:217/654 - (33%) Gaps:224/654 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 EQHFQQQQATSFALASASEEDEEDEEMDVEEEPRQESGERKVRVRTAINEEQQQQLKQHYSLN-- 721
            |..:.:::.||   ..:|..:.:.:....|..|  |:|..: |:|||....|..:|::.:..|  
  Fly   164 EYPWMKEKKTS---RKSSNNNNQGDNSITEFVP--ENGLPR-RLRTAYTNTQLLELEKEFHFNKY 222

  Fly   722 -ARPSRDEFRMIAARLQLDPRVVQVWFQNNRSRERKM-------------------QSFQNNQA- 765
             .||.|.|   |||.|.|..|.|:|||||.|.:.::.                   ||..|:.: 
  Fly   223 LCRPRRIE---IAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSK 284

  Fly   766 ---AGAAPP---MPIDSQASLTREDQPLDLSVKRDP----LTPKS-------------------- 800
               .|...|   :| ||.::....:.....:...:|    |||.|                    
  Fly   285 KSCQGCELPSDDIP-DSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASN 348

  Fly   801 -------------------ESSPPYI-APPSGEALNPEAINLSRKFSTSA--SMSPASIS---PS 840
                               ||||..: ....|:.:..||::.|.|.|...  :.:|:.:|   .|
  Fly   349 VISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSSKASPFGYENSTPSLVSFRRDS 413

  Fly   841 SAAALYFGAAPP---------PSPPNSQLDSTPRS-------------GQAFPGLPP-------- 875
            .|:|:  |.||.         .|..|:....||.|             |..|||..|        
  Fly   414 DASAV--GNAPTSKAVGKKRFQSAANAIATPTPLSDSNSGNGSGGGPAGGYFPGYYPSPKQQQQV 476

  Fly   876 ---------YMLPMSLPMEALFKMRPGGDFAS--NHALMNSIKLPDYRGTSLSPGGS-------E 922
                     ..||...|.:...|.  ..:||:  :|...|  |.....|..|||..|       .
  Fly   477 QQQQLHPQQQQLPQQQPQDYYGKY--DIEFAASPHHNPHN--KQQALHGEYLSPKPSSANFHQNS 537

  Fly   923 KRSWRDDDSRISHEDEFGAGVLMPPKPRRGKAETH-------GHAGDPDLP-----------YVC 969
            ::..::|....::.|..|...|...:.....|:.|       .|..|.:.|           |..
  Fly   538 QQQQQNDHFYYNYNDTNGTPYLNHQQQHHHHAQHHQQQQHHQNHVADFEGPVNGPSNFNNGAYYD 602

  Fly   970 DQCDKAFAKQSSLARHK-YEHSGQRPYQCIECPKAFKHKH-HLTEHKRLHSGEKPFQCSKCLKRF 1032
            :.   :|.:|:...:|: .....|:|:|    |.|..|:| |     .|.:||            
  Fly   603 NM---SFQQQAQAHQHQTVVFQQQQPHQ----PAAINHQHMH-----HLGNGE------------ 643

  Fly  1033 SHSGSYSQHMNHRYSYCKPYREXVSDTSVPPTCQPGANPLAPPAMASNRGRRRVQVPAG-NPPYT 1096
                :||. :..:...|:.|...            ||           .|.......|| .||..
  Fly   644 ----TYSA-LGLQMENCEGYNNF------------GA-----------AGTGGGYYEAGQQPPIP 680

  Fly  1097 PHHQHPHHPHLAAMAAFQQQHQQQQQQHQHHRLSWNGGGVMLPPPPSQQAH-RPTAPHPPPLLSG 1160
            ..|.|.||||...:.|     |.....|.||..:...|||.:.||||   | ...|.:..|.:.|
  Fly   681 ATHGHGHHPHHVQVPA-----QAHAPIHAHHNSAAIPGGVGVGPPPS---HIHGFAINGGPAVQG 737

  Fly  1161 SGFG 1164
            ..||
  Fly   738 QAFG 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zfh1NP_733401.3 C2H2 Zn finger 291..311 CDD:275368
C2H2 Zn finger 326..346 CDD:275368
zf-H2C2_2 338..365 CDD:463886
zf-C2H2 355..377 CDD:395048
C2H2 Zn finger 357..377 CDD:275368
zf-H2C2_2 369..391 CDD:463886
Homeodomain 701..756 CDD:459649 24/57 (42%)
C2H2 Zn finger 969..989 CDD:275368 3/20 (15%)
zf-H2C2_2 981..1006 CDD:463886 6/25 (24%)
C2H2 Zn finger 997..1017 CDD:275368 5/20 (25%)
zf-H2C2_2 1009..1034 CDD:463886 4/24 (17%)
C2H2 Zn finger 1025..1042 CDD:275368 2/16 (13%)
pbNP_476669.3 Homeodomain 199..255 CDD:459649 24/59 (41%)
Blue background indicates that the domain is not in the aligned region.

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