DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4H2 and AT4G38710

DIOPT Version :10

Sequence 1:NP_651820.1 Gene:eIF4H2 / 43645 FlyBaseID:FBgn0039797 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_001190956.1 Gene:AT4G38710 / 830027 AraportID:AT4G38710 Length:465 Species:Arabidopsis thaliana


Alignment Length:278 Identity:61/278 - (21%)
Similarity:105/278 - (37%) Gaps:82/278 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GGGVGR--GGSTGAANGNNPYYQRRNYRRDDSVGSHQFRRREPRSNSSNHQMSNSSPTQSTTSIN 228
            |||...  ||..|..:.::.:...|.....:..|....|.|||        ..:|.|:::....|
plant   112 GGGFRSYGGGRYGDESSSSRWGSSRVSEDGERRGGGFNRDREP--------SRDSGPSRADEDDN 168

  Fly   229 YNRTTRGGFNSRVAVGGNGNRYQGGAPRNFNDREDQQSTGS-GGFQRNRTYNFNRSMNNSVGGGG 292
            :..       ::..:.|||          |..||    .|| |||..:::.:....:::.|.   
plant   169 WAA-------AKKPISGNG----------FERRE----RGSGGGFFESQSQSKADEVDSWVS--- 209

  Fly   293 AGVGRGGHPQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHY---NPNHSGSSGGYNNNGN 354
               .:...|:|..:.|||||.                 ..::||.:   :.|.....||...:.:
plant   210 ---TKPSEPRRFVSSNGGGGD-----------------RFEKRGSFESLSRNRDSQYGGGGGSES 254

  Fly   355 NTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPRTV----------TAPINSL 409
            :|:|....      ...|::|:.|.|..        .||:|||:|||:          .:|:..:
plant   255 DTWGRRRE------ESGAANGSPPPSGG--------SRPRLVLQPRTLPVAVVEVVKPESPVLVI 305

  Fly   410 AETKQAALIFGKAKPRDD 427
            .|..:.|..||.|:||::
plant   306 VEKPKGANPFGNARPREE 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4H2NP_651820.1 RRM_SF 58..144 CDD:473069
AT4G38710NP_001190956.1 eIF-4B 37..>343 CDD:310698 61/278 (22%)
PTZ00121 <318..464 CDD:173412 3/6 (50%)
Blue background indicates that the domain is not in the aligned region.

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