DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4H2 and sgnh-1

DIOPT Version :10

Sequence 1:NP_651820.1 Gene:eIF4H2 / 43645 FlyBaseID:FBgn0039797 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_500666.2 Gene:sgnh-1 / 177260 WormBaseID:WBGene00020354 Length:177 Species:Caenorhabditis elegans


Alignment Length:113 Identity:30/113 - (26%)
Similarity:47/113 - (41%) Gaps:15/113 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 YVGNLPKGLVQGDVMKIFSDF----EVKNVRLIKDRETDEFKGYGYVEFETLAQLKSALNCNGRI 126
            ||||:.   .:..|.:|...|    :|..|.:.||:.|...|.:.:|||:.|..::.||..:|.:
 Worm    49 YVGNVD---WKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTM 110

  Fly   127 KLDNFSAPLRIDIADHRRQNPGAPSGVGGAPPAGVGHERGGGVGRGGS 174
            ..:.     :|.:...|...||.........||   |......|:.||
 Worm   111 FRNR-----KIMVTLKRTNKPGMGRTATAQKPA---HFAKSSHGKPGS 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4H2NP_651820.1 RRM_SF 58..144 CDD:473069 21/81 (26%)
sgnh-1NP_500666.2 RRM_II_PABPs 47..119 CDD:409747 21/77 (27%)

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