DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaPV and LOC110438585

DIOPT Version :9

Sequence 1:NP_733395.1 Gene:PH4alphaPV / 43640 FlyBaseID:FBgn0051015 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_021326960.1 Gene:LOC110438585 / 110438585 -ID:- Length:441 Species:Danio rerio


Alignment Length:464 Identity:140/464 - (30%)
Similarity:232/464 - (50%) Gaps:80/464 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 EEYLSNPLNSFSLIRRMNRDWIIWQLYMDDPVGISQVERIQ-ELREHM-PTHTDVEEAVTALDRI 148
            ||.|.:|:.::.|:.|:..:.|.....:...:.:||.:..| ||:..: |.:.|::.|.:.|.|:
Zfish    23 EENLRDPVAAYKLLCRLREELIYIIETIQSIIDVSQCDEFQDELKTTLIPQYEDLDGAASGLIRL 87

  Fly   149 QSTYGLKVPEISHGFLNGKQYNVSLTVLDTYAMGQILFDQKNYLAAASWIYQSVV---------- 203
            |..|.|...:|:.        ..||...:.:.:|::.:.:..:..|..|...|.:          
Zfish    88 QEIYKLYPEDITK
--------ETSLDADEAFHVGRVAYKEYKFQHAFLWFSYSGIRWTENSSTNE 144

  Fly   204 --LMEAFSMAA------PLEISKNEVRMVYAETLLKLNQHADALK-----VVNIALTDNPHDIKL 255
              |:...|::|      |..|       .|::.||.||.:.:.:|     :::...:.||:..:|
Zfish   145 KDLLHYLSLSAKHFGSLPWAI-------YYSQELLYLNPYDNEVKLQLNRLLHFQKSPNPNIFRL 202

  Fly   256 LLKKSEIETMIRTGTNNAPPVKVQATGVPTAYQIGCRGQFPPSADSK---LYCLYNRT-TSPFLI 316
                                     ..:.:.|:..|||:.......:   |.|.|:.: .:|.|:
Zfish   203 -------------------------DSLSSNYEALCRGEVDERTSKRQRALSCRYSTSGGNPRLM 242

  Fly   317 LAPLKMELVGLDPYMVLYHDVLSPKEIKELQGMATPGLKRATVYQASSGRNEVVKTRTSKVAWFP 381
            .||:|.|.:..:|.::.:|||:|..||:.|:.:|.|.|.|:.|||  .|:.::.|.|.|: :.|.
Zfish   243 YAPVKEEELWDEPKIIRFHDVISDTEIETLKDIARPQLSRSGVYQ--DGQGKISKHRVSQ-SVFL 304

  Fly   382 DGYNPLTVRLNARISDMTGFNLYGSEMLQLMNYGLGGHYDQHYDFFNKTNSNMTAMSGDRIATVL 446
            |..:|:...::.||.|:||.::..:|.|.:.|||:||.::.|.|...:.|        |||||.|
Zfish   305 DDDDPVDAHVSQRIEDVTGLSMEKAEPLLVQNYGIGGRFEPHIDALGEEN--------DRIATFL 361

  Fly   447 FYLTDVEQGGATVFPNIRKAVFPQRGSVVMWYNLKDNGQIDTQTLHAACPVIVGSKWVCNKWIRE 511
            .|::|||:||||||..:..||.|::||.|.||||:.||:.|..|.||.|||:.|:|||.||||.|
Zfish   362 IYMSDVEEGGATVFIKVGIAVKPEKGSAVFWYNLQKNGESDFNTKHAGCPVLQGNKWVANKWIAE 426

  Fly   512 REQIFSRPC 520
            ..|:|.|||
Zfish   427 FGQVFRRPC 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaPVNP_733395.1 P4Ha_N 35..164 CDD:285528 21/79 (27%)
TPR_11 179..250 CDD:290150 15/93 (16%)
TPR repeat 179..213 CDD:276809 7/51 (14%)
TPR repeat 218..248 CDD:276809 6/34 (18%)
P4Hc 339..510 CDD:214780 75/170 (44%)
LOC110438585XP_021326960.1 P4Ha_N <19..100 CDD:311993 21/76 (28%)
P4Hc 265..424 CDD:214780 74/169 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.