Protein Alignment Rpt6R and psmc1a

DIOPT Version :10

• Sequence 1: NP_651811.1
• Gene: Rpt6R / 43635
• FlyBaseID: FBgn0039788
• Length: 399
• Species: Drosophila melanogaster
• Sequence 2: NP_956327.1
• Gene: psmc1a / 336786
• ZFINID: ZDB-GENE-030131-8730
• Length: 440
• Species: Danio rerio
• Alignment Length: 380
• Identity: 175/380 - (46%)
• Similarity: 249/380 - (65%)
• Gaps: 10/380 - (2%)

  Fly    18 YTQKISELQFTVNERQKNLL-------RLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMD 75
            :||  ..|:....||.|:.|       |.|.|...|..|....|.::..|:.....:..:.:.:|
Zfish    55 HTQ--CRLKLLKQERIKDYLLMEEEFIRDQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIID 117

  Fly    76 KNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPDS 140
            .|..:|......::.|.:...::...:.|...|.|.::.:.:..:|.:..||||::|.|||.|..
Zfish   118 DNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182

  Fly   141 TYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHHTECTF 205
            ||..:||||.|||||||.:|||:.|||.::.:||..||||:|||.|||||||||:|||:.|..||
Zfish   183 TYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 247

  Fly   206 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGT-GDSEVQRTMLEL 269
            :||.||||:||::|:|.::|||||.:|.||||||:|:||||:||:.|.::.: |:.|:|||||||
Zfish   248 LRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 312

  Fly   270 LNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG 334
            |||||||::..::|||||||||:.||.||:||||||||||||.|:|:.:..|.:||:.:|.:...
Zfish   313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVADD 377

  Fly   335 INLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSE 389
            :.|..:.......|||::|.:|||||:.||||||:.||.|||:.:...|:.|..|
Zfish   378 VTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6R	NP_651811.1	PRK03992	21..395	CDD:179699	173/377 (46%)
psmc1a	NP_956327.1	PTZ00361	25..440	CDD:185575	175/380 (46%)