DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6R and Atad2b

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001349278.1 Gene:Atad2b / 320817 MGIID:2444798 Length:1457 Species:Mus musculus


Alignment Length:435 Identity:131/435 - (30%)
Similarity:211/435 - (48%) Gaps:98/435 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VNERQKNLLRLQAQRNELNL----KVRLLREELQLLQEQGSYIAEVV--------------KPMD 75
            |..|:|:|     :||...:    :|....||.:..:|.|....|..              |.:|
Mouse   233 VKRRRKSL-----RRNSYGIQNHHEVSTEGEEEESQEEDGDIEVEEAEGEENDRPYNLRQRKTVD 292

  Fly    76 KNKV--LVKVHPEGK--YVVDVDKTINIKDVTPSSRVALRNESYTLH------------------ 118
            :.:.  :|..|.:.:  .:.|:.:       :|:.|..:|.:.:.:|                  
Mouse   293 RYQAPPIVPAHQKKRENTLFDIHR-------SPARRSHIRRKKHAIHSSDTTSSDEERFERRKSK 350

  Fly   119 -------KILPN--KVDPLVSLMLVEKVP-------------DST--YEMVGGLDKQIQEIKEVI 159
                   :.||.  :.:.|.|.:|.|:|.             |.:  ::.:|||...|..:||::
Mouse   351 SMARARNRCLPMNFRAEDLASGILRERVKVGASLADVDPMNIDKSVRFDSIGGLSHHIHALKEMV 415

  Fly   160 ELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVSGSELVQKF 217
            ..|:.:||:|:...|..|:|.|.||||||||||:|||:|:  ||:       |....|::.:.|:
Mouse   416 VFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN--ECSQGDKKVAFFMRKGADCLSKW 478

  Fly   218 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTGD---SEVQRTMLELLNQLDGFEAT 279
            :||..|.:|.||..|....|||||.||||  |.|.:.:...|   |.:..|:|.|   :||.:..
Mouse   479 VGESERQLRLLFDQAYLMRPSIIFFDEID--GLAPVRSSRQDQIHSSIVSTLLAL---MDGLDNR 538

  Fly   280 KNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAE 342
            ..|.||.||||:|.:|.||.||||.||:..|..|::.||..||:||:|..|  |:... |.::||
Mouse   539 GEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQRARKHILQIHTRDWNPKLSDAF-LGELAE 602

  Fly   343 EMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVSKVMM 385
            :..|..||::|.:||||.:.|||.|  :::.:....::.|:.:::
Mouse   603 KCVGYCGADIKALCTEAALTALRRRYPQIYASSHKLQLDVTSIVL 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 131/435 (30%)
Atad2bNP_001349278.1 RecA-like_Yta7-like 400..569 CDD:410925 75/175 (43%)
AAA_lid_3 594..634 CDD:465537 15/40 (38%)
P-loop containing Nucleoside Triphosphate Hydrolases 758..894 CDD:476819
COG5076 840..>1085 CDD:227408
Bromo_AAA 959..1070 CDD:99957
Blue background indicates that the domain is not in the aligned region.

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