Protein Alignment Rpt6R and Atad2

DIOPT Version :10

• Sequence 1: NP_651811.1
• Gene: Rpt6R / 43635
• FlyBaseID: FBgn0039788
• Length: 399
• Species: Drosophila melanogaster
• Sequence 2: NP_001128351.1
• Gene: Atad2 / 314993
• RGDID: 1304849
• Length: 1373
• Species: Rattus norvegicus
• Alignment Length: 501
• Identity: 141/501 - (28%)
• Similarity: 219/501 - (43%)
• Gaps: 152/501 - (30%)

  Fly    20 QKISELQFTVNERQKNLLRL----QAQRNELNLKVRLLREELQLLQEQ------GS--------- 65
            ||:.:::....:|.|.|..|    :.:.:.|.:..|..|:.:|...|:      ||
  Rat   188 QKMDDMKKMRRQRMKKLEDLGVFNETEESNLTMYTRGKRKAIQQADEETTDNQDGSVESSEEGEE 252

  Fly    66 -------------------------------------YIAEVVKPMDKNKV-------------- 79
                                                 |.|.:.||..:.|.
  Rat   253 QEDDDGEDEEDDEDEEEDGEEDNQKRYYLRQRKATVYYQAPLEKPRHQRKPNMFYSGPASPARPR 317

  Fly    80 --LVKVHPEGKYVVDVDK---TINIKDVTPSS---------RVALRNESYTLHKILP-------- 122
              |....|...|...:::   .|:..|.|.||         |...||.:..:::.||
  Rat   318 YRLSSSGPRSPYCKRMNRRRHAIHSSDSTSSSSSSEDECFERRRKRNRNRAINRCLPLNFRKDEI 382

  Fly   123 --------------NKVDPLVSLMLVEKVPDST--YEMVGGLDKQIQEIKEVIELPVKHPELFDA 171
                          ..|||:..        ||:  ::.||||...|..:||::..|:.:||:|:.
  Rat   383 RGIYKDRMKIGANLADVDPMQL--------DSSVRFDSVGGLSSHIAALKEMVLFPLLYPEVFEK 439

  Fly   172 LGITQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVSGSELVQKFIGEGSRMVRELF 229
            ..|..|:|.|.||||||||||:|||:|:  ||:       |....|::.:.|::||..|.:|.||
  Rat   440 FKIQPPRGCLFYGPPGTGKTLVARALAN--ECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLF 502

  Fly   230 VMAREHAPSIIFMDEIDSIGSARLETGTGD---SEVQRTMLELLNQLDGFEATKNIKVIMATNRI 291
            ..|.:..|:|||.||||  |.|.:.:...|   |.:..|:|.|   :||.::...|.||.||||:
  Rat   503 DQAYQMRPAIIFFDEID--GLAPVRSSRQDQIHSSIVSTLLAL---MDGLDSRGEIVVIGATNRL 562

  Fly   292 DVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN--LRKIAEEMPGASGAEVKG 354
            |.:|.||.||||.||:..|..|:::||.:|||||:|..| .:.::  |.::||...|..||::|.
  Rat   563 DSIDPALRRPGRFDREFLFSLPDKDARKEILKIHTRDWN-PKPVDMFLEELAENCVGYCGADIKS 626

  Fly   355 VCTEAGMYALRER----------------RVHVTQEDFEMAVSKVM 384
            :|.||.:.|||.|                .::::.:|||.|:.|::
  Rat   627 ICAEAALCALRRRYPQIYTTSEKLQLDLSSINISAKDFETAMQKII 672

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6R	NP_651811.1	PRK03992	21..395	CDD:179699	140/500 (28%)
Atad2	NP_001128351.1	RecA-like_Yta7-like	412..581	CDD:410925	75/175 (43%)
		AAA_lid_3	609..643	CDD:465537	14/33 (42%)
		ycf46	<778..919	CDD:177094
		Bromo_AAA	972..1082	CDD:99957