DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt6R and Katnal2

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001419361.1 Gene:Katnal2 / 307253 RGDID:1564708 Length:537 Species:Rattus norvegicus


Alignment Length:470 Identity:133/470 - (28%)
Similarity:214/470 - (45%) Gaps:106/470 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 FHSYYTQKISELQFTV-----------------------NERQKNLLRLQAQRNE---------- 45
            :.|||..|..:....|                       |:..:||.::..|::.          
  Rat    75 YESYYFVKFQKYPKVVKKASDQVENNISSRSGGKNKRLTNDNCQNLPKIYHQKSRPKTSTVKTGD 139

  Fly    46 -LNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTIN--IKDVT---- 103
             .::|....:|.:...|.:.|.....:..:.|:....|.||....::|....:.  ||..|    
  Rat   140 TKSVKEHPKQESVTNAQAESSDFGLNISKIHKDSPEEKAHPRRGQIIDFRGLLTDAIKGATSEYA 204

  Fly   104 ---------PSSR--------VALRNESYTLHKILPNKVDPLVSLMLVEKVPDSTYEMVGGLDKQ 151
                     ||.|        :.:.:|...|..:        ||..:....|:..:..:.|||..
  Rat   205 LNTFECNPDPSERLLKPLSAFIGMNSEMRELAAV--------VSRDIYLHNPNIKWNDIIGLDAA 261

  Fly   152 IQEIKEVIELPVKHPELFDALGITQP-KGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSEL 213
            .|.:||.:..|:::|:||  .||..| ||:||||||||||||||:|||  |||  ||..:|.|.:
  Rat   262 KQLVKEAVVYPIRYPQLF--TGILSPWKGLLLYGPPGTGKTLLAKAVA--TECKTTFFNISASTI 322

  Fly   214 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTGDSEVQ-RTMLELLNQLDGFE 277
            |.|:.|:..::||.||.:||.||||.||:||::|:.|.|.....|:.|.. |...|||.|:||..
  Rat   323 VSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLA 387

  Fly   278 ATKNIKVIMATNRID-VLDQALLRPGRIDRKIEFPPPNEEARLDIL--------KIHSRKMNLTR 333
            .::::..::|.:.:. .||.|:||  |::::|....|::|||..::        |.|:  :.|..
  Rat   388 RSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEARQAMIYHWLPPVSKNHA--LELRT 448

  Fly   334 GINLRKIAEEMPGASGAEVKGVCTEAGMYALRE------------------RRVHVTQEDFEMAV 380
            .:....:::|..|.||:::|.||.||.|..:|:                  :...||.|||...:
  Rat   449 QLEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDFLDVL 513

  Fly   381 SKVMMKDSEKNMSIR 395
            :..  |.|.||::.|
  Rat   514 AHT--KPSAKNLTER 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 129/461 (28%)
Katnal2NP_001419361.1 LisH 25..55 CDD:128913
RPT1 184..525 CDD:440835 115/358 (32%)
RecA-like_VPS4-like 255..419 CDD:410917 76/169 (45%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.