Protein Alignment Rpt6R and Katna1

DIOPT Version :10

• Sequence 1: NP_651811.1
• Gene: Rpt6R / 43635
• FlyBaseID: FBgn0039788
• Length: 399
• Species: Drosophila melanogaster
• Sequence 2: NP_001004217.2
• Gene: Katna1 / 292464
• RGDID: 1303062
• Length: 493
• Species: Rattus norvegicus
• Alignment Length: 428
• Identity: 138/428 - (32%)
• Similarity: 216/428 - (50%)
• Gaps: 60/428 - (14%)

  Fly    22 ISELQFTVNERQKNLLRLQAQRNEL--------NLKVRLLREELQLLQEQGSYIAEVVKP-MDKN 77
            :.|:..|:...:.:...|:|.::||        :|.|.:.|..|...:::.|......|| .::.
  Rat    68 VKEIMKTLESFKLDSTSLKAAQHELPSSEGEVWSLPVPVERRPLPGPRKRQSTQHSDPKPHSNRP 132

  Fly    78 KVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKIL----PNKVD------PLVSLM 132
            ..:|:.|......:..|:...::......:...|.|...|...:    .||.|      .||..:
  Rat   133 GAVVRAHRPSAQSLHSDRGKAVRSREKKEQSKGREEKNKLPAAVTEPEANKFDSTGYDKDLVEAL 197

  Fly   133 ---LVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQP-KGVLLYGPPGTGKTLL 193
               ::.:.|:..:..:..|.:..:.::|.:.||:..||.|.  ||.:| ||||:.||||||||||
  Rat   198 ERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLL 260

  Fly   194 ARAVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETG 256
            |:|||  |||  ||..||.|.|..|:.||..::||.||.|||.::|:.||:||||||.|.|   |
  Rat   261 AKAVA--TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---G 320

  Fly   257 TGDSE--VQRTMLELLNQLDGF-------EATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPP 312
            |.:..  .:|...|||.|:||.       :.:|.:.|:.|||....:|:||.|  |::::|..|.
  Rat   321 TSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 383

  Fly   313 PNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRER---------- 367
            |:.:.|.::|:|..|::.|...:||..|||.|.|.|||::..||.:|.:.|:|.|
  Rat   384 PSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIR 448

  Fly   368 -----RVHV--TQEDFEMAVSKVMMKDSEKNMSIRKFW 398
                 .:|:  |.||||||:.||....|..::...:.|
  Rat   449 NLSREEMHMPTTMEDFEMALKKVSKSVSAADIERYEKW 486

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6R	NP_651811.1	PRK03992	21..395	CDD:179699	137/423 (32%)
Katna1	NP_001004217.2	Kp60-NTD	7..74	CDD:439297	1/5 (20%)
		RPT1	134..474	CDD:440835	123/348 (35%)
		RecA-like_KTNA1	212..381	CDD:410930	78/177 (44%)