DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt6R and Katnal1

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001006957.1 Gene:Katnal1 / 288449 RGDID:1359252 Length:488 Species:Rattus norvegicus


Alignment Length:350 Identity:119/350 - (34%)
Similarity:182/350 - (52%) Gaps:62/350 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 VTPSSRVALRNESYTLH----KILPNKVD-----------------PLVSLM---LVEKVPDSTY 142
            ::.|.:.|.|::.|...    |...|..|                 .||..:   :|.:.|...:
  Rat   141 ISKSDKAASRDKDYRARGRDDKARKNMQDGASDGEIPKFDGAGYDKDLVEALERDIVSRNPSIHW 205

  Fly   143 EMVGGLDKQIQEIKEVIELPVKHPELFDALGITQP-KGVLLYGPPGTGKTLLARAVAHHTEC--T 204
            :.:..|::..:.::|.:.||:..|:.|.  ||.:| ||||:.||||||||:||:|||  |||  |
  Rat   206 DDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVA--TECGTT 266

  Fly   205 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTGDSE--VQRTML 267
            |..||.|.|..|:.||..::||.||.|||.:||:.||:||||||.|.|   ||.|..  .:|...
  Rat   267 FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKS 328

  Fly   268 ELLNQLDGF-------EATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIH 325
            |||.|:||.       :.:|.:.|:.|||....:|:||.|  |::::|..|.|..:.|.::|||.
  Rat   329 ELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKIS 391

  Fly   326 SRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 373
            .|::.|...|:|..|||:..|.|||::..:|.:|.:.|:|.|                 ::.||:
  Rat   392 LREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRALSKEELQMPVTR 456

  Fly   374 EDFEMAVSKVMMKDSEKNMSIRKFW 398
            .|.|:|:.|:....|..::...:.|
  Rat   457 GDLELALKKIAKSVSAADLEKYEKW 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 118/345 (34%)
Katnal1NP_001006957.1 Kp60-NTD 4..72 CDD:439297
SpoVK 52..452 CDD:440232 111/319 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..179 7/37 (19%)
RecA-like_KTNA1 207..376 CDD:410930 78/177 (44%)
Vps4_C <448..486 CDD:462762 7/33 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.