Protein Alignment Rpt6R and rpt4

DIOPT Version :10

• Sequence 1: NP_651811.1
• Gene: Rpt6R / 43635
• FlyBaseID: FBgn0039788
• Length: 399
• Species: Drosophila melanogaster
• Sequence 2: NP_587809.2
• Gene: rpt4 / 2539189
• PomBaseID: SPCC1682.16
• Length: 388
• Species: Schizosaccharomyces pombe
• Alignment Length: 385
• Identity: 174/385 - (45%)
• Similarity: 242/385 - (62%)
• Gaps: 19/385 - (4%)

  Fly    28 TVNERQKNLLRLQAQRNELNLKVRLLR--------------EELQLLQEQGSYIAEVVKPMDKNK 78
            |..|:.|:.|   .|..|.:.|::.||              ::::.||..|..|.||:|.:|..:
pombe     6 TALEKYKSYL---LQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

  Fly    79 VLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPDSTYE 143
            .:||.....:|||.....::...:....||:|...:.|:.:|||.:|||||..|.:|...|.::.
pombe    68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFA 132

  Fly   144 MVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 208
            .||||::||:|::||||||:|:||||..:||..||||||||||||||||||||||......|::|
pombe   133 GVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKV 197

  Fly   209 SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGT-GDSEVQRTMLELLNQ 272
            ..|.:|.|:|||.:|::||:|..|:||.|.:|||||||:||..|...|| .|.|:|||::|||||
pombe   198 VSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 262

  Fly   273 LDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 337
            :|||:.....|:||||||.|.||.|||||||:|||||.|.|||..|::|||||..|::....|:.
pombe   263 MDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDY 327

  Fly   338 RKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVM-MKDSEKNMSIRK 396
            ..:.:...|.:||:::.|.||||..|::|.|.:|.|.|...|..||. :|..|..:..:|
pombe   328 EALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQK 387

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6R	NP_651811.1	PRK03992	21..395	CDD:179699	173/382 (45%)
rpt4	NP_587809.2	PRK03992	3..373	CDD:179699	169/369 (46%)