DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt6R and Psmc4

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_036004.2 Gene:Psmc4 / 23996 MGIID:1346093 Length:418 Species:Mus musculus


Alignment Length:401 Identity:174/401 - (43%)
Similarity:249/401 - (62%) Gaps:25/401 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PEGSEGFHSYYTQKISELQFT------VNERQKNLLR--LQAQRNELNLKVRLLREELQLLQEQG 64
            ||..|..:|.|.:...||:|.      :.:.||||.:  |.||            ||::.:|...
Mouse    34 PEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQ------------EEVKRIQSIP 86

  Fly    65 SYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLV 129
            ..|.:.::.:|:|..:|.......|.|.:..||:.:.:.|::.|||...|..|..:||.:.|..:
Mouse    87 LVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSI 151

  Fly   130 SLMLVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLA 194
            .::..::.||..|..:||:|.|.||::|.:|||:.|.||:..:||..|:|||:|||||.|||:||
Mouse   152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLA 216

  Fly   195 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTG- 258
            :||||||...||||.|||.|||::|||.||||::|.:|:|:||:|||:||||:|.:.|.:..|| 
Mouse   217 KAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281

  Fly   259 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILK 323
            |.||||.:||||||:|||:...|:||||||||.|.||.|||||||:|||||||.|:...:..|..
Mouse   282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 346

  Fly   324 IHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDS 388
            ..:.||||:..::|..........|||::..:|.|:||.|:||.|..|..:|||.|...|:.||.
Mouse   347 TITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 411

  Fly   389 EKNMSIRKFWK 399
            :::    :|:|
Mouse   412 QEH----EFYK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 167/382 (44%)
Psmc4NP_036004.2 PTZ00454 34..418 CDD:240423 173/399 (43%)

Return to query results.
Submit another query.