DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6R and Katna1

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_035965.3 Gene:Katna1 / 23924 MGIID:1344353 Length:491 Species:Mus musculus


Alignment Length:433 Identity:141/433 - (32%)
Similarity:223/433 - (51%) Gaps:66/433 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 QKISELQFTVNERQKNLLRLQAQRNEL--------NLKVRLLREELQLLQEQGSYIAEVVKP-MD 75
            :::.::..|:...:.::..|||.::|.        :|.|.:.|..|...:::.|......|| .:
Mouse    64 KQVKDIMKTLESFKLDITSLQAAQHEFPAAEGEVWSLPVPVERRPLPGPRKRQSSQHSDPKPHSN 128

  Fly    76 KNKVLVKVH---PEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKIL----PNKVD------P 127
            :...:|:.|   |:..: .|..|.:..::....|:.  |.|...|...:    .||.|      .
Mouse   129 RPSTVVRAHRPSPQNLH-NDRGKAVRSREKKEQSKG--REEKNKLPAAVTEPEANKFDGTGYDKD 190

  Fly   128 LVSLM---LVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQP-KGVLLYGPPGT 188
            ||..:   ::.:.|:..:..:..|.:..:.::|.:.||:..||.|.  ||.:| ||||:.|||||
Mouse   191 LVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGT 253

  Fly   189 GKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 251
            ||||||:|||  |||  ||..||.|.|..|:.||..::||.||.|||.::|:.||:||||||.|.
Mouse   254 GKTLLAKAVA--TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSR 316

  Fly   252 RLETGTGDS-EVQRTM-LELLNQLDGF-------EATKNIKVIMATNRIDVLDQALLRPGRIDRK 307
            |   ||.:. |..|.| .|||.|:||.       :.:|.:.|:.|||....:|:||.|  |::::
Mouse   317 R---GTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKR 376

  Fly   308 IEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRER----- 367
            |..|.|:.:.|.::|:|..|::.|...:||..|||.|.|.|||::..||.:|.:.|:|.|     
Mouse   377 IYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLT 441

  Fly   368 ----------RVHV--TQEDFEMAVSKVMMKDSEKNMSIRKFW 398
                      .:|:  |.||||||:.|:....|..::...:.|
Mouse   442 PEEIRNLSREAMHMPTTMEDFEMALKKISKSVSAADIERYEKW 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 140/427 (33%)
Katna1NP_035965.3 Interaction with microtubules, sufficient for microtubule severing activity. /evidence=ECO:0000269|PubMed:28436967 1..185 24/123 (20%)
Interaction with dynein and NDEL1. /evidence=ECO:0000250 1..75 1/10 (10%)
Interaction with KATNB1 1..29
Kp60-NTD 4..72 CDD:439297 0/7 (0%)
SpoVK 61..469 CDD:440232 138/416 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..182 16/83 (19%)
RecA-like_KTNA1 210..379 CDD:410930 80/177 (45%)
Vps4_C <456..489 CDD:462762 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.

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