DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6R and Psmc5

DIOPT Version :10

Sequence 1:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_032976.1 Gene:Psmc5 / 19184 MGIID:105047 Length:406 Species:Mus musculus


Alignment Length:396 Identity:346/396 - (87%)
Similarity:367/396 - (92%) Gaps:3/396 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IPEG--SEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAE 69
            :.||  ..|...||..||.|||..||::.:||.||||||||||.||||||||||||||||||:.|
Mouse    11 LEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGE 75

  Fly    70 VVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLV 134
            ||:.|||.|||||||||||:||||||.|:|.||||:.||||||:|||||||||||||||||||:|
Mouse    76 VVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMV 140

  Fly   135 EKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAH 199
            ||||||||||:|||||||:||||||||||||||||:||||.||||||||||||||||||||||||
Mouse   141 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

  Fly   200 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGT-GDSEVQ 263
            ||:|||||||||||||||||||:||||||||||||||||||||||||||||:|||.|: ||||||
Mouse   206 HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270

  Fly   264 RTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 328
            |||||||||||||||||||||||||||||:||.||||||||||||||||||||||||||||||||
Mouse   271 RTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 335

  Fly   329 MNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSEKNMS 393
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||:|||.||||||||
Mouse   336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMS 400

  Fly   394 IRKFWK 399
            |:|.||
Mouse   401 IKKLWK 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 337/374 (90%)
Psmc5NP_032976.1 PRK03992 24..400 CDD:179699 336/375 (90%)
May mediate interaction with PRPF9. /evidence=ECO:0000269|PubMed:17349974 186..406 206/219 (94%)

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