DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tmod and lmod1b

DIOPT Version :10

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_073772860.1 Gene:lmod1b / 795335 ZFINID:ZDB-GENE-141215-22 Length:671 Species:Danio rerio


Alignment Length:531 Identity:120/531 - (22%)
Similarity:214/531 - (40%) Gaps:127/531 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDIEDVFGG----SAEETKPEPDA--QSKTSVVTEHT--EEVIPGETEKMVTETIDEDGDVVEET 58
            ||..|  ||    |:..:.|:.|.  :.:|..|||.|  |:..|....|. .|.|::..| .::.
Zfish   117 SDSRD--GGLQRTSSTSSFPKRDGRLEDRTRRVTEGTRDEKFGPSAVSKR-DEEIEKKND-TKDQ 177

  Fly    59 TEVTRKTVKRTMKITETSATTKTTTLTTPAKLYGKDLSEYDD--------VDVESLLAQLSPEE- 114
            .:.:|...:|.|:.:.:|.|.:..:.....|...|:.::.:|        ...:.:::::..:| 
Zfish   178 NDGSRLRDRREMRESSSSKTKELISKLQEKKEDSKEKNKKEDRGKRESGESRAKEMISRIQEKEE 242

  Fly   115 ------ITILAKEVDPDDNFLPPDQRNSYEC----TKEATGPLNRKQ------------LIEHIN 157
                  ..|..:|......:|...:.|..:.    |||.....:.||            |.|:..
Zfish   243 KEREKKEEIRKREETKSKGYLSRLEENQNQVHEDKTKEENKHRDEKQIRSSEKVKETTALSENKE 307

  Fly   158 KQAIETPDQPEFEPFVQGKVRGKKWVPPPRDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLA 222
            |::.......|.......|.||           |::...:...::.:..|..:.:...:.|:   
Zfish   308 KESENVKRLQECNAKSSDKGRG-----------DVQKHNENVNEVHKPKEEKIENCVSDTIL--- 358

  Fly   223 AILGFHSMMNQDQYHASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTDVEESIKRVKDDDSKL 287
                                ||:         ||..::     |..:.:..:|.:::|:.:|..:
Zfish   359 --------------------KGK---------TKEEEE-----DDESASMFDEDLEKVRRNDPGM 389

  Fly   288 IDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAAAIEKSKTLRVLNVETN 352
            .|||:||.:.|..:.|.|...||..|.|::..||.|....|..|..:|..:..:|::..:|:::|
Zfish   390 TDLNVNNSEVIKTKTLIQFSEALKNNTHIKAFSLANCRADDHVAYAIADTLRNNKSITSINLDSN 454

  Fly   353 FISPPVIVKLVQALLKCHTIEEFRASNQRSAVLGNKIEMEITDLVEKNSSLLRLGLHLEFNDARH 417
            .::...|:.|:|||....|:.|.|..|||. ::|.|.|||:|.::::|::||:||.|.|....|.
Zfish   455 LLTSKGIMSLIQALQHNSTLTELRFHNQRH-IIGGKSEMEMTKILKENTTLLKLGYHFELAGPRM 518

  Fly   418 RVAAHLQRNIDRIFRVQKL---------------------KPNLPKLILPGNMEIERDLVAYNRS 461
            .:...|.||:|| .|.::|                     ||:..|    |:.         ..|
Zfish   519 TMTNILSRNMDR-QRQKRLQEQKQAQAQGAGDKKDSLGVPKPSFGK----GSP---------RAS 569

  Fly   462 ATPSPSPSPQP 472
            ..|||.|||.|
Zfish   570 PIPSPIPSPAP 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:460862 22/172 (13%)
PPP1R42 <285..421 CDD:455733 46/135 (34%)
lmod1bXP_073772860.1 None

Return to query results.
Submit another query.