DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and lmod3

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001072680.1 Gene:lmod3 / 780137 XenbaseID:XB-GENE-5737414 Length:611 Species:Xenopus tropicalis


Alignment Length:480 Identity:120/480 - (25%)
Similarity:208/480 - (43%) Gaps:118/480 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DDVDVESLLAQLSPEEITILAKEVDPDDNFLPPD--------QRNSYECTKEATGPLNRKQLIEH 155
            :|:|.:.:||.|||||:..|..|::    .|.||        ||:..|  |..||..:.:.||::
 Frog    15 EDIDEDEILANLSPEELKALQNEIE----VLAPDPEVPVGMIQRDQTE--KAPTGQFDHRSLIDY 73

  Fly   156 I-----NKQAIETPDQP-------------EFEPFVQGK--VRGKKWVP--PPRD-----ARDIE 193
            :     :|:.:|....|             |.|.....|  |...:.:|  ||.|     ...:.
 Frog    74 LHWEKESKRMLEEERVPVTLLPSERNFLRTETEEACNQKNDVEAVEELPETPPDDNVNTAENHLS 138

  Fly   194 AEEQIAIDMGEEY------------------------------------EHALNDATQEEIIDLA 222
            ..|:|.|..|:|.                                    |....:.|.:||    
 Frog   139 DAEEICIGNGQETPSRDSSDEDSEKAKENENTMENGDSQPECDVTDPIPETVEEEKTVQEI---- 199

  Fly   223 AILGFHSMMNQDQYHASLLN------KGQPVG-LGWDGITK-----STQQKLFPMDPPNNTDVEE 275
                .:|:...|.....:.|      :.:|.| :|...:.|     |:..|:......|.|::::
 Frog   200 ----SNSVQTSDDISDPVENTPEKPPENKPNGKVGKLNLPKKLTLDSSFIKMSARPSGNQTNLDK 260

  Fly   276 SIKRVKDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAAAIEK 340
            :::.:::::..:.::|||||:||..|.|.....|:.:|::::|||:.|||..|..|..:|..:..
 Frog   261 TLQSIRENNPDVKEVNLNNIENIPKEMLVDFVNAMKKNKYVKVLSMANVGADDNVAFTIANMLRD 325

  Fly   341 SKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLGNKIEMEITDLVEKNSSLLR 405
            ::::..||:|:||||...||.:::.|.....:.|.|..|||. :||:..||||:.|::.|::||:
 Frog   326 NRSIVTLNIESNFISGKGIVAIMRCLQFNEYLTELRFHNQRH-MLGHHAEMEISRLLKANNTLLK 389

  Fly   406 LGLHLEFNDARHRVAAHLQRNIDRIFRVQKLKPNLPK----------LILPGNME--IERDLVAY 458
            :|.|.|....|..|...|.||:|:  :.||.|....:          ..|...:|  |.|:|:..
 Frog   390 MGYHFELPGPRMVVTNLLSRNLDK--QRQKRKEEQKQQQDNEQDELMAALENALELGIPRELLEM 452

  Fly   459 NRSATPS------PSPSPQPPVDYE 477
            ...:.|:      |..:|.||:..:
 Frog   453 LDRSLPNSRLQSIPEETPPPPLSQQ 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268 43/204 (21%)
LRR_RI <285..421 CDD:238064 50/135 (37%)
lmod3NP_001072680.1 Tropomodulin 15..>92 CDD:367418 25/82 (30%)
MDN1 <104..242 CDD:227596 24/145 (17%)
LRR_RI <264..>360 CDD:393385 30/95 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1025132at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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