DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and nlrx1

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_021322089.1 Gene:nlrx1 / 557335 ZFINID:ZDB-GENE-071119-3 Length:1005 Species:Danio rerio


Alignment Length:513 Identity:117/513 - (22%)
Similarity:185/513 - (36%) Gaps:157/513 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDIEDVFGGSAEETKPEPDAQSK-----TSVVTEHTEE--VIPGET----EKMVTETIDEDGDVV 55
            :|:.|.|....::...:|:.:.:     ..::.|:...  |:.||.    ||:..|..:..|...
Zfish   488 TDVLDFFLVPRDDYGSDPETKGRRYVFAVPIMQEYLAALYVVLGENKTVLEKLTKEVSEALGPAS 552

  Fly    56 EETT---EVTRKTV-----------KRTMKITE--TSATTKTTTLTTPAKLYGKDLSEYDDV--D 102
            |:.|   .|..|.:           |...|:.|  :|.:......|..|:::..:.|..:||  .
Zfish   553 EDITSLLSVLSKIIPFRIFAIFNLLKLFPKLFEKVSSYSKGRIANTMAAEMFRSEDSFNEDVLDQ 617

  Fly   103 VE-SLLAQLSP---EEITILAKEVDP----------DDNFLPPDQRN---SYECTKEATGPLNRK 150
            || |||....|   |||...|.|:.|          :...|  ||..   ......:.|..| ||
Zfish   618 VEQSLLGVHGPQPQEEIYTRAFELYPIFMGGLLHYGNRRLL--DQLGCNIKSHTVSQITRAL-RK 679

  Fly   151 QLIEHINKQAIETPDQPEFEPFVQGKVRGKKWVPPPRDARDIEAEEQIAIDMGEEYEH------- 208
            .||:...|.                        .||.:..|:       :.:..|:::       
Zfish   680 NLIKQSQKN------------------------QPPEELMDL-------LVLLYEFQNPRLTAEV 713

  Fly   209 -----ALN----DATQEEIIDLAAILGFHSMMNQDQYHASLLNKGQPVGLGWDGITKSTQQKLFP 264
                 :||    ..|..:...|:.:||    .....:|.:.||      |....||....|.|:|
Zfish   714 LQSIKSLNLSTVRMTPHKCFVLSTVLG----CTTSSFHLNELN------LSSCHITPELLQMLWP 768

  Fly   265 --------------MDPPNNTDVEESIKRVKDDDSKLIDLNLNNIKN-------ISDEKLEQLFA 308
                          :||       ||...::|   .|::.|. .||:       :||..:..|..
Zfish   769 AFRHTRNLNLQFNSLDP-------ESCILLRD---LLLEPNC-TIKSLQLCDNYLSDSGISHLLE 822

  Fly   309 ALPQNEHLEVLSLTNVGLTDKTALLLAAAIEKSKTLRVLNVETNFISPPVIVKLVQALLK---CH 370
            ||..|..|:.|:|.:.||:||:|||||..:.:...|:.|||..|.|.....:.||.|..:   .|
Zfish   823 ALSGNHSLQRLNLMHTGLSDKSALLLAEKLGQHDQLKELNVAYNNIGDSAALTLVDACREHPSIH 887

  Fly   371 TIEEFRASNQRSAVLGNKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAHLQRNID 428
            |:..:  .||            :|| |.|.|..:|.|..:: ...|.:|.|.:....|
Zfish   888 TVHLY--LNQ------------LTD-VAKQSLYVRGGPRVK-EGRRVKVLASVTEGSD 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268 35/176 (20%)
LRR_RI <285..421 CDD:238064 44/145 (30%)
nlrx1XP_021322089.1 P-loop_NTPase 179..338 CDD:328724
LRR_RI 664..904 CDD:330982 70/307 (23%)
leucine-rich repeat 717..740 CDD:275380 4/22 (18%)
leucine-rich repeat 748..777 CDD:275381 8/34 (24%)
leucine-rich repeat 778..801 CDD:275381 7/33 (21%)
leucine-rich repeat 802..829 CDD:275381 8/26 (31%)
leucine-rich repeat 830..857 CDD:275381 12/26 (46%)
leucine-rich repeat 858..885 CDD:275381 9/26 (35%)
leucine-rich repeat 886..911 CDD:275381 11/39 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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