DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and Nod1

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001102706.1 Gene:Nod1 / 500133 RGDID:1562269 Length:953 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268
LRR_RI <285..421 CDD:238064
Nod1NP_001102706.1 DD 21..104 CDD:301326
NACHT 197..367 CDD:283404
LRR_RI <728..941 CDD:238064
leucine-rich repeat 730..757 CDD:275380
leucine-rich repeat 758..785 CDD:275380
leucine-rich repeat 786..813 CDD:275380
leucine-rich repeat 814..841 CDD:275380
leucine-rich repeat 842..869 CDD:275380
leucine-rich repeat 870..897 CDD:275380
leucine-rich repeat 898..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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