DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and Nlrc3

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_011244204.1 Gene:Nlrc3 / 268857 MGIID:2444070 Length:1109 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268
LRR_RI <285..421 CDD:238064
Nlrc3XP_011244204.1 NACHT 176..342 CDD:368582
NOD2_WH 432..490 CDD:375327
NLRC4_HD2 492..617 CDD:375325
LRR_RI <662..863 CDD:393385
leucine-rich repeat 673..701 CDD:275380
leucine-rich repeat 705..730 CDD:275380
leucine-rich repeat 733..760 CDD:275380
leucine-rich repeat 761..788 CDD:275380
leucine-rich repeat 789..816 CDD:275380
LRR_RI 792..1097 CDD:393385
leucine-rich repeat 817..840 CDD:275380
leucine-rich repeat 845..872 CDD:275380
leucine-rich repeat 873..900 CDD:275380
leucine-rich repeat 901..928 CDD:275380
leucine-rich repeat 929..949 CDD:275380
leucine-rich repeat 957..977 CDD:275380
leucine-rich repeat 985..1012 CDD:275380
leucine-rich repeat 1013..1047 CDD:275380
leucine-rich repeat 1048..1075 CDD:275380
leucine-rich repeat 1076..1095 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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