DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and LMOD1

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_036266.2 Gene:LMOD1 / 25802 HGNCID:6647 Length:600 Species:Homo sapiens


Alignment Length:553 Identity:141/553 - (25%)
Similarity:223/553 - (40%) Gaps:163/553 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 YGKDLSEYDDVDVESLLAQLSPEEITILAKE---VDPDDNFLPPDQRNSYECTKEATGPLNRKQL 152
            |.:.:||  |.|::|||..|||||:..|.||   ||||.: :|...|...:..|::||..||:.:
Human     7 YRRQVSE--DPDIDSLLETLSPEEMEELEKELDVVDPDGS-VPVGLRQRNQTEKQSTGVYNREAM 68

  Fly   153 IEHINKQA---------------IETPDQPEFEPFVQGKVRG----KKWVPPPRDA--------- 189
            :....|:.               :||....:     .|:.||    ||.:.|.||:         
Human    69 LNFCEKETKKLMQREMSMDESKQVETKTDAK-----NGEERGRDASKKALGPRRDSDLGKEPKRG 128

  Fly   190 ---------RDIEA---------EEQI-----------AID--------MGEEYEHAL------- 210
                     || ||         ||:|           |:|        .|||...|.       
Human   129 GLKKSFSRDRD-EAGGKSGEKPKEEKIIRGIDKGRVRAAVDKKEAGKDGRGEERAVATKKEEEKK 192

  Fly   211 -----------NDATQEEIIDLA-------------------------AILGFHSMMNQDQ---- 235
                       .|..:||:.::|                         ...|...|..:|:    
Human   193 GSDRNTGLSRDKDKKREEMKEVAKKEDDEKVKGERRNTDTRKEGEKMKRAGGNTDMKKEDEKVKR 257

  Fly   236 --------YHASLLNKGQPV---GLGWDGITKSTQQKLFPMDPPNNTD-------------VEES 276
                    .....:.|.:|:   ....|..|| |.:|..|..|...::             .:|.
Human   258 GTGNTDTKKDDEKVKKNEPLHEKEAKDDSKTK-TPEKQTPSGPTKPSEGPAKVEEEAAPSIFDEP 321

  Fly   277 IKRVKDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAAAIEKS 341
            ::|||::|.::.::|:||...|::|.|.:...||..|..:::.:|.|....|..|..:|..::.:
Human   322 LERVKNNDPEMTEVNVNNSDCITNEILVRFTEALEFNTVVKLFALANTRADDHVAFAIAIMLKAN 386

  Fly   342 KTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLGNKIEMEITDLVEKNSSLLRL 406
            ||:..||:::|.|:...|:.:.:|||:.:|:.|.|..|||. :.|.|.||||..|:::|::||:|
Human   387 KTITSLNLDSNHITGKGILAIFRALLQNNTLTELRFHNQRH-ICGGKTEMEIAKLLKENTTLLKL 450

  Fly   407 GLHLEFNDARHRVAAHLQRNIDRIFRVQKLKPNLPKLILPGN----MEIERDLVAYNRSATPSPS 467
            |.|.|....|..|...|.||:|: .|.::|:.........|.    :|:.:.......|..|||.
Human   451 GYHFELAGPRMTVTNLLSRNMDK-QRQKRLQEQRQAQEAKGEKKDLLEVPKAGAVAKGSPKPSPQ 514

  Fly   468 PSPQPPVDYEVEEDPDNMVIRGGGDAFDPDVDP 500
            |||:|        .|.|...:||..|..|...|
Human   515 PSPKP--------SPKNSPKKGGAPAAPPPPPP 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268 57/252 (23%)
LRR_RI <285..421 CDD:238064 46/135 (34%)
LMOD1NP_036266.2 Tropomodulin 7..>83 CDD:281268 28/78 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 38..61 7/23 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..324 40/250 (16%)
TEBP_beta <159..298 CDD:254188 21/139 (15%)
8 X approximate tandem repeats 165..293 19/128 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 472..573 20/77 (26%)
5 X 4 AA approximate tandem repeats 508..527 10/26 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157770
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3735
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1025132at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10901
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
65.810

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