DRSC/TRiP Functional Genomics Resources

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Protein Alignment tmod and lmod1

DIOPT Version :9

Sequence 1:NP_001247372.1 Gene:tmod / 43633 FlyBaseID:FBgn0082582 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_002939676.1 Gene:lmod1 / 100379914 XenbaseID:XB-GENE-979212 Length:550 Species:Xenopus tropicalis


Alignment Length:492 Identity:128/492 - (26%)
Similarity:200/492 - (40%) Gaps:113/492 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 YGKDLSEYDDVDVESLLAQLSPEEITILAKEV---DPDDNF---LPPDQRNSYECTKEATGPLNR 149
            |.:.:||  |.|:::||:.|||||:..|.||:   |||...   |..||.....|.:||......
 Frog     7 YRRQVSE--DPDIDNLLSTLSPEEMEQLQKELDAGDPDAGVSAGLRRDQTERASCQREAEREREN 69

  Fly   150 KQL---------------IEHINKQAIE------TPDQPEFEPFVQ------GKVRGKKWVPPPR 187
            |:|               ::...::.:|      |.||...:...:      .|...||..|.|:
 Frog    70 KKLAQRQATTEKEKSTEKVKDNKEKKVEESKESRTKDQNRTKKLEEPKDTKTQKTDLKKETPKPK 134

  Fly   188 DAR-----------------DIEAEEQIAIDMGEEYEHALNDATQEEIIDLAAILGFHSMMNQDQ 235
            |.|                 |.|..|:|......| |.|:. .|::...:|.|.........:.:
 Frog   135 DDRVSKMRERFKQEKTSSTVDKEKPERILSKKPSE-EKAMK-TTEKGNTELKAERDVKDKKREAE 197

  Fly   236 Y---------HASLLNKGQPVGLGWD----------GITKSTQQKLFPMDPP-----NNTD---- 272
            .         ..||....:|.||..|          .:.|.:.|:..|::.|     |.|:    
 Frog   198 EKPPEKCQVPEKSLKKPEKPEGLSNDKKVIGKNLPNELNKESLQQEQPIEKPANETQNQTEEGKE 262

  Fly   273 ------VEESIKRVKDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTA 331
                  .||.:::||::|.:..:||:||...|:.|.|.....||..|..::|.||.|....|..|
 Frog   263 DESSSIFEELMEKVKNNDPETTELNVNNSDCITIETLMSFTEALEFNTVVKVFSLANTRADDHIA 327

  Fly   332 LLLAAAIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLGNKIEMEITDL 396
            |.:||.::.:|.:..:|:::|.|:...|:.:.:||....|:.|.|..|||. :.|.|.||||..:
 Frog   328 LAIAALLKSNKIITSINLDSNHITGKGILAIFRALQHNDTLTELRFHNQRH-ICGGKTEMEIAKM 391

  Fly   397 VEKNSSLLRLGLHLEFNDARHRVAAHLQRNIDR----------IFRVQKLKPN---LPK------ 442
            :::|::||:||.|.|....|..|...|.||:|:          .......|||   :||      
 Frog   392 LKENTTLLKLGYHFELAGPRMTVTNLLSRNMDKQRQRRQAERAAQATDNKKPNCLEVPKINTTQK 456

  Fly   443 -----LILPGNMEIERDLVAYNRSATPSPSPSPQPPV 474
                 |:....|..::.....|....|.|.|.|..|:
 Frog   457 TSPKPLLQSSPMNSQKRTSKKNEVPAPPPPPPPLAPL 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tmodNP_001247372.1 Tropomodulin 91..233 CDD:281268 47/191 (25%)
LRR_RI <285..421 CDD:238064 47/135 (35%)
lmod1XP_002939676.1 Tropomodulin 7..>57 CDD:367418 21/51 (41%)
PTZ00121 <62..>275 CDD:173412 39/214 (18%)
LRR_RI <285..402 CDD:393385 41/117 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1025132at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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