DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9698 and p4ha2

DIOPT Version :9

Sequence 1:NP_651806.2 Gene:CG9698 / 43629 FlyBaseID:FBgn0039784 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_005173949.1 Gene:p4ha2 / 373132 ZFINID:ZDB-GENE-030827-1 Length:542 Species:Danio rerio


Alignment Length:543 Identity:161/543 - (29%)
Similarity:271/543 - (49%) Gaps:31/543 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLFLLFHQAIPSVSGVEFFSSIHEMTKVFGYEQKMVLHMQKFLSDNQDKLDFLKARLREFENERN 72
            ::|||...:..|.:..|.|:||.:||.:...|:::|..:::::...:.||:.:::...:.:....
Zfish     5 LVFLLSTLSFSSPTRAEIFTSIGQMTNLIFTERELVQSLKEYIQAEEQKLETVRSWANKLDKLTR 69

  Fly    73 EAREWGPSYFESPINKYLLNKRLTVDWQRVENLMATSTGEKPLTRLRKFRNRETMPDKKELEGAI 137
            .:......:...|:|.|.|.|||..:|..:|:|:.....:..::.:..  :|:..||:::.:||.
Zfish    70 TSTSDPEGFLAHPVNAYKLMKRLNTEWSELESLVLQDPSDGFISNMSV--HRQYFPDEEDEKGAA 132

  Fly   138 DGLLRLQYVYRLKAKDLARGIL------DGVDYGTQLNSEHCVDIARLALRDQHPRLAHSWLIEA 196
            ..|||||..|:|.|:..::|.|      .||.|...|..:.|.|:.::|..|.....:..|:.::
Zfish   133 KALLRLQDTYKLDAESFSKGKLPGQRQHSGVRYNALLTVDDCFDMGKMAYNDNDYYHSVLWMQQS 197

  Fly   197 NDRLTGGEKEEQLKPQILALLVQAKKELEDFRGLNDTYQELIGIQSASEEHAKNYETFLNALSEK 261
            ..::..||:.:..|..:|..|..:..::.|.....:..:.|:.|..:.:....|...|     |:
Zfish   198 LRQMDSGEEAKTPKADVLDYLSYSVYQMGDLPRAIELTRRLLAIDPSHQRAGGNLRYF-----ER 257

  Fly   262 ALLNESKPILEHAPIPEEGEPV------------GEFQAYSLTCSGHW-RLTPKEQRHLRCGYVT 313
            .|..|.:...:..|.|.:..|:            .|.:||...|.|.. ::|.|.|..|.|.|..
Zfish   258 LLSKELQDSGQTQPEPADERPIQLDTYQRPKDYLPEREAYEALCRGEGVKMTTKRQSRLFCRYRD 322

  Fly   314 -ETHPFLWIAPLKAEELFQDPLLVLYHDVIYQSEIDVIRKLTENRLMRATITSHNESV--VSNVR 375
             ..:|.|.:.|:|.|:.:..|.:|.:.:.:...||..|:::...:|.|||:......|  |::.|
Zfish   323 GNRNPRLLLKPMKEEDEWDSPHIVRFLEALSDEEIQKIKEIATPKLARATVRDPKTGVLTVAHYR 387

  Fly   376 TSQFTFIPVTAHKVLSTIDQRVADMTNLNMKYAEDHQFANYGIGGHYGQHMDWFYQTTFDAGLVS 440
            .|:..::......|::.::||:.|:|.|.:..||..|.||||:||.|..|.|:..:...||  ..
Zfish   388 VSKSAWLEGEDDPVIARVNQRIEDITGLTVDTAELLQVANYGVGGQYEPHFDFSRKDEPDA--FK 450

  Fly   441 SPEMGNRIATVLFYLSDVAQGGGTAFPQLRTLLKPKKYAAAFWHNLHASGVGDVRTQHGACPIIA 505
            |...|||:||.|.|:|||..||.|.||.....:.|:|..|.||:||..||.||.||:|.|||::.
Zfish   451 SLGTGNRVATYLNYMSDVEAGGATVFPDFGASVWPRKGTAVFWYNLFRSGEGDYRTRHAACPVLV 515

  Fly   506 GSKWVQNRWIRENDQSDRRPCEL 528
            |||||.|:||.|..|..||||.|
Zfish   516 GSKWVSNKWIHERGQEFRRPCGL 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9698NP_651806.2 P4Ha_N 28..159 CDD:285528 32/130 (25%)
P4Hc 345..516 CDD:214780 71/172 (41%)
p4ha2XP_005173949.1 P4Ha_N 25..154 CDD:285528 32/130 (25%)
P4Hc 353..526 CDD:214780 71/174 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100878
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.820

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