DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaNE2 and PH4alphaSG1

DIOPT Version :9

Sequence 1:NP_733378.1 Gene:PH4alphaNE2 / 43628 FlyBaseID:FBgn0039783 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_733376.1 Gene:PH4alphaSG1 / 326112 FlyBaseID:FBgn0051014 Length:540 Species:Drosophila melanogaster


Alignment Length:535 Identity:147/535 - (27%)
Similarity:245/535 - (45%) Gaps:60/535 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SVVNMDDMLNLEDDLVSNVEKLAEALARKAKTIKWGVFKMMKRRQEYKSSMEIFANPIDTFSLIR 97
            ::..::.:|::|..:|...::..|...::.:.:|..:.::.:::.:.....|.|.|||:.|..|:
  Fly    23 AISELERLLDVEAFIVEKFDEYLERAQQEQENLKRFLDQIDEQQNDRGDLEEYFGNPINAFITIK 87

  Fly    98 HMQSNWLMWLLYLETPVGQEELF------FVDSRMPLL---PKYFDFIDAAEGIRKMQATYQMFS 153
            .:..:|...:.   .||.....|      ..||...:.   |...|...|...:.::|..||:.:
  Fly    88 RLVHDWKFNVF---DPVFDSSNFETYKNNLSDSLEKINFKGPTQEDLHGATRALLRLQNMYQLNT 149

  Fly   154 SDIAKGLLDGVQYN---SSLKPIDCLAIGLHLMNNSRWYAAEQWISASIEAYDQ---------KS 206
            ..:|.|:|...:.|   :||...||..:|.:|.....:....:|:   :||..:         ..
  Fly   150 DHLASGVLHPGEKNALGTSLSASDCFELGKNLCEIKEYSYGSEWL---LEARKRLHGKPLGFISP 211

  Fly   207 SQTDMELLRGPKLADLCRILGQVQM----------KQRNHEGALQAYQVALKLSPHDPEIYEEYR 261
            :.:|:|:|.  .|:.....||.:::          |:.:||.||:           :..:||...
  Fly   212 NVSDVEILE--HLSSAFNGLGNLKLAYKLNNEILDKKPDHEEALK-----------NKILYEGQL 263

  Fly   262 ILEKRDLTLSDIE-PIEQDKDNSHERLVLPPCCSGRC-QVPRNLSNLYCVYNHVTSPFLQLAPIK 324
            ..|:.......:| |...:|:......:....|.|.. |.||...||.|...|...|:.:|:|.|
  Fly   264 ARERSFAPRKQVELPQIAEKEQKESYKLYTQVCRGELHQSPREQRNLRCWLYHQGVPYYRLSPFK 328

  Fly   325 TEILSIDPFVVLLHDMISQKESTLIRTSSKEHMLPSATTDPDASDDETQVDTYRTSKSVWYSSDF 389
            .|.|::||:|..:|:::...|...|....|.:|..|..    ...:.:.....|.|::.|...|.
  Fly   329 IEQLNVDPYVAYVHEVLWDSEIDTIMEHGKGNMERSKV----GQSENSTTSEVRISRNTWLWYDA 389

  Fly   390 NDTTKKITERLGDATGLDMNSTEFYQVINYGLGGFFETHLDMLLSE-KNRFNGTSDRIATTLFYL 453
            |....||.:||.|.|||...|.|..|::|||:||.:|.|.|.:..: ::.|:...:|:.|.||||
  Fly   390 NPWLSKIKQRLEDVTGLSTESAEPLQLVNYGIGGQYEPHFDFVEDDGQSVFSWKGNRLLTALFYL 454

  Fly   454 NEVRQGGGTYFPRLNLTVFPQPGSALFWYNLDTKGNDHMGSLHTGCPVIVGSKWVMSKWINDMGQ 518
            |:|..||.|.||.|.|.|.|..||.|.||||.:..:....:.|.||||:.||||:.::|.:...|
  Fly   455 NDVALGGATAFPFLRLAVPPVKGSLLIWYNLHSSTHKDFRTKHAGCPVLQGSKWICNEWFHVGAQ 519

  Fly   519 EFTRPCVESSLSSNE 533
            ||.|||   .|||:|
  Fly   520 EFRRPC---GLSSDE 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaNE2NP_733378.1 P4Ha_N 33..161 CDD:285528 26/136 (19%)
TPR repeat 175..200 CDD:276809 4/24 (17%)
TPR_16 176..254 CDD:290168 16/96 (17%)
TPR repeat 219..249 CDD:276809 8/39 (21%)
TPR_2 220..253 CDD:285020 7/42 (17%)
P4Hc 342..513 CDD:214780 63/171 (37%)
PH4alphaSG1NP_733376.1 P4Ha_N 23..157 CDD:285528 26/136 (19%)
P4Hc 347..515 CDD:214780 64/171 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461954
Domainoid 1 1.000 91 0.514 Domainoid score I2609
eggNOG 1 0.900 - - E1_KOG1591
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I2378
Isobase 1 0.950 - 0 Normalized mean entropy S4458
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 1 1.000 - - mtm1209
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
1110.850

Return to query results.
Submit another query.