DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15539 and p4ha2

DIOPT Version :9

Sequence 1:NP_001036776.1 Gene:CG15539 / 43627 FlyBaseID:FBgn0039782 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_005173949.1 Gene:p4ha2 / 373132 ZFINID:ZDB-GENE-030827-1 Length:542 Species:Danio rerio


Alignment Length:563 Identity:167/563 - (29%)
Similarity:263/563 - (46%) Gaps:86/563 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 AILYLLVLVKSHSKPKILENNYAISIYDMSKLIDYEHYLLNILQKFANALQKRVDTLEYYLEMTD 73
            |.|..|:...|.|.|...|  ...||..|:.||..|..|:..|:::..|.:::::|:..:....|
Zfish     3 AFLVFLLSTLSFSSPTRAE--IFTSIGQMTNLIFTERELVQSLKEYIQAEEQKLETVRSWANKLD 65

  Fly    74 -------YDREKNLAEDPIKHFRITRRLHSDYVNWVWFMEEQPWGTLVKDIIAIAPEMPTLKDVE 131
                   .|.|..||. |:..:::.:||::::......:.:.|....:.::.......|..:|.:
Zfish    66 KLTRTSTSDPEGFLAH-PVNAYKLMKRLNTEWSELESLVLQDPSDGFISNMSVHRQYFPDEEDEK 129

  Fly   132 EAIRGLRLIQWTYSLPTAEMAKGVL------QDIHHNTSLDGMQCITIARHMVNYKDFIRAKEWL 190
            .|.:.|..:|.||.|.....:||.|      ..:.:|..|....|..:.:...|..|:..:..|:
Zfish   130 GAAKALLRLQDTYKLDAESFSKGKLPGQRQHSGVRYNALLTVDDCFDMGKMAYNDNDYYHSVLWM 194

  Fly   191 MVGLKMYEADEEIEYIYSQLGMPLVDFYELFVEIQDELGSRYLAMSELQLAIKNWPEKVSLQRAL 255
            ...|:..::.||.:       .|..|..:            ||:.|..|:.  :.|..:.|.|.|
Zfish   195 QQSLRQMDSGEEAK-------TPKADVLD------------YLSYSVYQMG--DLPRAIELTRRL 238

  Fly   256 -------SRLKMNIR-----IGK----------EPAEKKN-------------KSKRVYKKCCSS 285
                   .|...|:|     :.|          |||:::.             ..:..|:..|..
Zfish   239 LAIDPSHQRAGGNLRYFERLLSKELQDSGQTQPEPADERPIQLDTYQRPKDYLPEREAYEALCRG 303

  Fly   286 E-----CRPTAKLYCLYKT-TSSYFLRLAPLKMELLSLDPYMVLFHDVVSDKDIVSIRNLTKGKL 344
            |     .:..::|:|.|:. ..:..|.|.|:|.|.....|::|.|.:.:||::|..|:.:...||
Zfish   304 EGVKMTTKRQSRLFCRYRDGNRNPRLLLKPMKEEDEWDSPHIVRFLEALSDEEIQKIKEIATPKL 368

  Fly   345 AR-TVTVSKDGNYTEDPDRTTKGTWLV-ENNALIQRLSQLTQDMTNFDIHDADPFQVLNYGIGGF 407
            || ||...|.|..|....|.:|..||. |::.:|.|::|..:|:|...:..|:..||.|||:||.
Zfish   369 ARATVRDPKTGVLTVAHYRVSKSAWLEGEDDPVIARVNQRIEDITGLTVDTAELLQVANYGVGGQ 433

  Fly   408 YGIHFDFLEDAELDNF-----SDRIATAVFYLSDVPQGGATIFPKLGLSVFPKKGSALLWYNLDH 467
            |..||||....|.|.|     .:|:||.:.|:|||..||||:||..|.||:|:||:|:.||||..
Zfish   434 YEPHFDFSRKDEPDAFKSLGTGNRVATYLNYMSDVEAGGATVFPDFGASVWPRKGTAVFWYNLFR 498

  Fly   468 KGDGDNRTAHSACPTVVGSRWVMTKWINEREQIFRRPC-LTSI 509
            .|:||.||.|:|||.:|||:||..|||:||.|.||||| ||.:
Zfish   499 SGEGDYRTRHAACPVLVGSKWVSNKWIHERGQEFRRPCGLTEV 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15539NP_001036776.1 P4Ha_N 33..156 CDD:285528 29/129 (22%)
P4Hc 329..494 CDD:214780 78/171 (46%)
p4ha2XP_005173949.1 P4Ha_N 25..154 CDD:285528 29/129 (22%)
P4Hc 353..526 CDD:214780 79/172 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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