DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaNE1 and dpy-18

DIOPT Version :9

Sequence 1:NP_733374.1 Gene:PH4alphaNE1 / 43625 FlyBaseID:FBgn0039780 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_499464.1 Gene:dpy-18 / 176569 WormBaseID:WBGene00001077 Length:559 Species:Caenorhabditis elegans


Alignment Length:570 Identity:174/570 - (30%)
Similarity:285/570 - (50%) Gaps:86/570 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VGLIFLLAQGSLASDYFSSITGLEDLLHTEQYLTRELRSKVNAIQTALQQLESELSSIEKEHTMA 72
            :.|:.|...|...:|.|:||..:::||.||:.:.:.|...::..:..|.||:.......|::.::
 Worm     3 LALLVLATIGYAVADLFTSIADMQNLLETERNIPKILDKYIHDEEERLVQLKKLSEEYSKKNEIS 67

  Fly    73 ASDTENYLTNPVNVYRLMKRLHTDWSLMEGRVQLMAEEMNFN---------ATREYGLSYPSQED 128
            ..:....:|||:|.:.|:||...||..:|.:       ||.|         ....||:.||:.:|
 Worm    68 IENGLKDITNPINAFLLIKRKIFDWKEIESK-------MNANKAGNVVSSITDDSYGVRYPTADD 125

  Fly   129 VEGAALALVRLQSTYKLDVAQVAQGILNGVKYGSDMSWQDCFELGQQLFEMEDYNNTKVWLRESM 193
            :.|||:.|:|||.||:||...:|.|.:...:.....|.:||||:.:..:...|:.:|.:|:.|:.
 Worm   126 LSGAAIGLLRLQDTYRLDTKDLADGKIYADQGNYTFSAKDCFEIARAAYNEHDFYHTVMWMEEAQ 190

  Fly   194 ERLRRQTSHAPSHLAPTSGPDTVTLNKMEATAKSLFQLGDFDTAFELSQRVLQFDPKRIR----- 253
            .||       ...:.||...:.:    :|..|.:|::..:...|.:|::.:.:.:|...|     
 Worm   191 RRL-------GDEVEPTVEVEDI----LEYLAFALYKQNNLKHALKLTEELYKMNPTHPRAKGNV 244

  Fly   254 NWH---LGDKG--------TAPPEDIDDVYLPKHSDSYSLSQEFAKYEKVCRGEVHPIVRQE--- 304
            .|:   |..:|        ..||  |.:    :..||...:.|...||.:||.|| |:.:::   
 Worm   245 KWYEDLLEQEGVRRSDMRKNLPP--IQN----RRPDSVLGNTERTMYEALCRNEV-PVSQKDISR 302

  Fly   305 LRCRYSRGNHPYRFLAPLKLEEHSLDPYVATFHDILSPGKISQLREMAVPRMHRSTVNPLPGGQL 369
            |.|.|.| :.|:...||:|:|....:|....|.|::|..:::.::|:|.|::.|:||:....|:|
 Worm   303 LYCYYKR-DRPFLVYAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKL 366

  Fly   370 KKSAFRVSKNAWL------AYESHPTMVGMLRDLKDATGLDTTFCEQLQVANYGVGGHYEPHWDF 428
            ..:.:|:||:|||      ..|:....:|.:      |.|:....|:||:||||:||||:||:| 
 Worm   367 VTATYRISKSAWLKEWEGDVVETVNKRIGYM------TNLEMETAEELQIANYGIGGHYDPHFD- 424

  Fly   429 FRDPNHYPAEE---------GNRIATAIFYLSEVEQGGATAFPFLDIAVKPQLGNVLFWYNLHRS 484
                 |...||         ||||||.:||:|:...||.|.|......:.|...:.||||||::.
 Worm   425 -----HAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKSTILPTKNDALFWYNLYKQ 484

  Fly   485 LDKDYRTKHAGCPVLKGSKWIGNVWIHEVTQTFARPCDVFRDHEVSLEYE 534
            .|.:..|:||.||||.|.||:.|.||||....|.|||.:     .|.:||
 Worm   485 GDGNPDTRHAACPVLVGIKWVSNKWIHEKGNEFRRPCGL-----KSSDYE 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaNE1NP_733374.1 P4Ha_N 26..155 CDD:285528 42/137 (31%)
P4Hc 341..511 CDD:214780 69/184 (38%)
dpy-18NP_499464.1 P4Ha_N 21..152 CDD:285528 42/137 (31%)
P4Hc 338..511 CDD:214780 69/184 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52324
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.830

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