DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaMP and P4ha3

DIOPT Version :9

Sequence 1:NP_524594.2 Gene:PH4alphaMP / 43624 FlyBaseID:FBgn0026190 Length:535 Species:Drosophila melanogaster
Sequence 2:XP_038938408.1 Gene:P4ha3 / 361612 RGDID:735150 Length:549 Species:Rattus norvegicus


Alignment Length:514 Identity:156/514 - (30%)
Similarity:248/514 - (48%) Gaps:70/514 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 FSSTSGLAKLFETEVVLLAELQNYVNEINQHAEALQSEIDAIRVEHLNAADGIDDYLNNPVNAFR 86
            ||:.:.:|:....|..||..|:.|:    :..||...::.....:.|:..:.:...:.||:.||.
  Rat    31 FSALTSVARALAPERRLLGTLRRYL----RGEEARLRDLTRFYDKVLSLHEDLKIPVVNPLLAFT 91

  Fly    87 LIKRLHSDWETFEGSVTADSSRSNYLDTMASLKENLSFPSQDDFVGSAIALTRLQQTYQLDVAEL 151
            |||||.|||.....|:.|..:.....|....::::|  |:.:|..|:|.||.|||..|.|:|..|
  Rat    92 LIKRLQSDWRNVVHSLEATENIRALKDGYEKVEQDL--PAFEDLEGAARALMRLQDVYMLNVKGL 154

  Fly   152 ASGILNGVKYGT-----------AMSWQDCFVLGQHLYALRDYNHTVPWLQQSMQLLGEQSYG-- 203
            |.|:...|...:           :::..|||.:|:..|...||.|.:|||::::.|. .:|||  
  Rat   155 AQGVFQRVTGSSITDLYSPRQLFSLTADDCFQVGKVAYDTGDYYHAIPWLEEAVSLF-RRSYGEW 218

  Fly   204 --SESASL-DFMEAVVEYHREMGAHESALSLVNHVLSIEPDQRSHLLEARQQL--EELITDGDKN 263
              .:.||| |.::.:.....::|....||||....|...||.:.   .||..|  |.|:.:   |
  Rat   219 KTEDEASLEDALDYLAFACYQVGNVSCALSLSREFLVYSPDNKR---MARNVLKYERLLAE---N 277

  Fly   264 GLLHLTA-----RRPGDYH-ESREFRMYEQVCRGELAPLPSKQR--NLRCRLRKSRLGY---APF 317
            |  ||.|     :||...| ::|:  .||.:|: .|...|:..:  :|.|....:...|   .|.
  Rat   278 G--HLMAAETAIQRPNVPHLQTRD--TYEGLCQ-TLGSQPTHYQIPSLYCSYETNSSPYLLLQPA 337

  Fly   318 KLEELHLDPLVVQLHQVIGSKDSDSLQKTARPRIKRSTVYSLGGNGGSTAAAFRTSQGASFNYSR 382
            :.|.:||.|||...|..:..:::..:::.|.|.::||.|.|   ........:|.|:.|....:.
  Rat   338 RKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVAS---GEKQLQVEYRISKSAWLKDTV 399

  Fly   383 NAATKLLSRHVGDFSGLNMD--YAEDLQVANYGIGGHYEPHWD--SFPENHIYQEGDLHGNRMAT 443
            :.....|.|.:...:||::.  |||.|||.|||||||||||:|  :.|.:.:|:...  |||:||
  Rat   400 DPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKS--GNRVAT 462

  Fly   444 GIYYLADVEAGGGTAFPF----LPLLVTPERGSLLFWYNLHPSGDQDFRTKHAACPVLQ 498
            .:.||:.|||||.|||.:    :|::..|..|     |.     ..|..::..|.|:|:
  Rat   463 LMIYLSSVEAGGATAFIYGNFSVPVVKWPTSG-----YT-----SMDRNSEDPAAPILK 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaMPNP_524594.2 P4Ha_N 24..156 CDD:285528 40/131 (31%)
P4Hc 336..509 CDD:214780 56/171 (33%)
P4ha3XP_038938408.1 P4Ha_N 34..108 CDD:400573 22/77 (29%)
P4Hc 356..>478 CDD:214780 46/126 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343167
Domainoid 1 1.000 63 1.000 Domainoid score I9991
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52324
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.760

Return to query results.
Submit another query.