DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaSG2 and p4ha3

DIOPT Version :9

Sequence 1:NP_651801.1 Gene:PH4alphaSG2 / 43623 FlyBaseID:FBgn0039779 Length:527 Species:Drosophila melanogaster
Sequence 2:XP_021322008.1 Gene:p4ha3 / 563281 ZFINID:ZDB-GENE-041010-4 Length:616 Species:Danio rerio


Alignment Length:533 Identity:153/533 - (28%)
Similarity:254/533 - (47%) Gaps:72/533 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FQLIIWVGVAN------GEFYSSVDSMQDLAQVEEELLNATRSYVESQQKQLDFYRRYVEQIKRE 70
            |.|.|.:.:.|      ||.::|:.|:......|.:|::....|:|.:.::|:..:|:..::...
Zfish     5 FTLFIVLYLLNMPDESFGEMFTSMLSVNQAVSAERKLIDHLIIYIEHEAQRLEDIKRFFSRVTSL 69

  Fly    71 HEWATSQLKLDDYLGHPLHAFRLIKRLVRDWDSLIFEPILANN---AREEFRAFVEVLSRDLGYP 132
            |:...::  ..|.:.:|:.||:|:|||..:|.:::.......|   .||::|.....|      |
Zfish    70 HDGIYNE--PSDPIANPIAAFKLVKRLKSEWLNVVHSTEAEENIKVLREDYRRMESSL------P 126

  Fly   133 DQSELQGAIKGLARLQKVYNLATSDLADGIIGGLNYGSD---------LRWRECYEIGVQLFDLG 188
            ...:|:||..||.|||.||||....|..|....::...|         |...:|:.:|...:||.
Zfish   127 KLEDLRGAAHGLMRLQDVYNLHVESLVRGHFQQISDPVDFYKLSVSDMLSGDDCFLVGKVAYDLE 191

  Fly   189 EYQRSLEWLQVAFILLRN---SPREEKDADHYLSDIREYASMANFELGNPKKAARLLSQILESQP 250
            :|..|:.|.:.|..|.|.   ||..|..    |.|..::.:.::|:.||...|..|..::|...|
Zfish   192 DYYHSVLWFEEAVRLFRGTEWSPENEGT----LEDALDHLAFSHFKTGNISHALSLSRELLLHDP 252

  Fly   251 TH-----SAQQTQKYLESRVPGKNVQET--KPSWF-----SNYTRLCQGR-RLPEERSGDPLRCY 302
            .:     :.::.:|.|...:|..:...|  :|...     :.|.:|||.: ..|:......|.| 
Zfish   253 MNRRVHFNVEKYEKLLNENLPATSSGLTLKRPDGIYLRTRNAYEQLCQTKGSQPKHFENPSLFC- 316

  Fly   303 LDGKRHAYFT-------LAPLQVEPVHLDPDINVYHGMLSSKQILSIFEEADKEEMVRSAVAGSG 360
                  .|||       |.|::.|.:.|.|.:.::||.::..:..:|.:.|  ...:|.:|..||
Zfish   317 ------DYFTNGSPALFLQPIRREIISLQPYVVLFHGFVTQAEAKNIRKYA--MPGLRRSVVASG 373

  Fly   361 GEGTVRDLRVSQQTWLDYKSPVMNSVGRI---IQFVSGFDMAG--AEHMQVANYGVGGQYEPHPD 420
            ......:.|:|:..||  |......||::   |..|:|.::..  ||::||.|||:||.||||.|
Zfish   374 MNQATAEYRISKSAWL--KESAHEVVGKLDQRITLVTGLNVQPPYAEYLQVVNYGIGGHYEPHFD 436

  Fly   421 YFEVN---LPKNFEGDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRSLHVDAR 482
            :...:   |.:...|:|::|.|.|||.|:.||.|.|...|..:|.|:.|.:.|.|||::...:..
Zfish   437 HATSDSSPLYRLKTGNRVATIMIYLSPVQAGGSTAFIYANFSVPVVQNAALFWWNLHKNGQGNVD 501

  Fly   483 TLHAGCPVIVGSK 495
            |||||||||||:|
Zfish   502 TLHAGCPVIVGNK 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaSG2NP_651801.1 P4Ha_N 28..163 CDD:285528 38/137 (28%)
P4Hc 335..503 CDD:214780 63/169 (37%)
p4ha3XP_021322008.1 P4Ha_N 27..157 CDD:311993 38/137 (28%)
P4Hc 350..519 CDD:214780 63/169 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583396
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.950

Return to query results.
Submit another query.