DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaSG2 and P4ha2

DIOPT Version :9

Sequence 1:NP_651801.1 Gene:PH4alphaSG2 / 43623 FlyBaseID:FBgn0039779 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001101745.1 Gene:P4ha2 / 360526 RGDID:1309673 Length:535 Species:Rattus norvegicus


Alignment Length:540 Identity:172/540 - (31%)
Similarity:268/540 - (49%) Gaps:53/540 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LIIWVGV---ANGEFYSSVDSMQDLAQVEEELLNATRSYVESQQKQLDFYRRYVEQIKREHEWAT 75
            |:.|.||   ...||::|:..|.||...|::|:.:.:.|:.:::.:|...:.:..::    |..|
  Rat     9 LMSWFGVLSWVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILAEEAKLSKIKSWASKM----EALT 69

  Fly    76 SQLKLD--DYLGHPLHAFRLIKRLVRDWDSLIFEPILANNAREEFRAFVEVLSRDLGYPDQSELQ 138
            |:...|  .||.||::|::|:|||..||.:|  ..::..:|...|.|.:.| .|.. :|...:..
  Rat    70 SKSAADPEGYLAHPVNAYKLVKRLNTDWPAL--GDLVLQDAAAGFVANLSV-QRQF-FPTDEDES 130

  Fly   139 GAIKGLARLQKVYNLATSDLADGIIGGLNYGSDLRWRECYEIGVQLFDLGEYQRSLEWLQVAFIL 203
            ||.:.|.|||..|.|....::.|.:.|..|.:.|...:|:.:|...::.|:|..::.|::.  :|
  Rat   131 GAARALMRLQDTYKLDPDMISRGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQ--VL 193

  Fly   204 LRNSPREEKDADHYLSDIREYASMANFELGNPKKAARLLSQILESQPTHS--------------- 253
            .:....||......|  :.:|.|.|.|:||:..:|..|..::|...|:|.               
  Rat   194 KQLDAGEEATVTKSL--VLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLRYFERLLEE 256

  Fly   254 ------AQQTQKYLESRVPGKNVQETKPSWFSN---YTRLCQGRRLP-EERSGDPLRC-YLDGKR 307
                  :.||...|.|:   :|:.|....:...   |..||:|..:. ..|....|.| |..|.|
  Rat   257 ERGKSLSNQTDAGLASQ---ENLYERPVDYLPERDVYESLCRGEGIKMTPRRQKRLFCRYHHGNR 318

  Fly   308 HAYFTLAPLQVEPVHLDPDINVYHGMLSSKQILSIFEEADKEEMVRSAVAG-SGGEGTVRDLRVS 371
            .....:||.:.|.....|.|..|:.::|.::|..| :|..|.::.|:.|.. ..|..||...|||
  Rat   319 VPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERI-KEIAKPKLARATVRDPKTGVLTVASYRVS 382

  Fly   372 QQTWLDY-KSPVMNSVGRIIQFVSGFDMAGAEHMQVANYGVGGQYEPHPDYFEVNLPKNFE---- 431
            :.:||:. ..||:..|.|.:|.::|..:..||.:||||||:|||||||.|:...:....|:    
  Rat   383 KSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDERDAFKRLGT 447

  Fly   432 GDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRSLHVDARTLHAGCPVIVGSKR 496
            |:|::|.:.|:||||.||.|||..|...:.|.||..|.|:||.||...|.||.||.|||:||.|.
  Rat   448 GNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKW 512

  Fly   497 IGNIWMHSGYQEFRRPCNLT 516
            :.|.|.|...|||.|||..|
  Rat   513 VSNKWFHERGQEFLRPCGTT 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaSG2NP_651801.1 P4Ha_N 28..163 CDD:285528 39/136 (29%)
P4Hc 335..503 CDD:214780 74/173 (43%)
P4ha2NP_001101745.1 P4Ha_N 27..104 CDD:400573 23/82 (28%)
P4Hc 346..519 CDD:214780 74/173 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

Return to query results.
Submit another query.