DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaSG2 and phy-3

DIOPT Version :9

Sequence 1:NP_651801.1 Gene:PH4alphaSG2 / 43623 FlyBaseID:FBgn0039779 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_507251.2 Gene:phy-3 / 188624 WormBaseID:WBGene00004026 Length:318 Species:Caenorhabditis elegans


Alignment Length:244 Identity:58/244 - (23%)
Similarity:103/244 - (42%) Gaps:30/244 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 WFSNYTRLCQGRRLPEERSGDPLRC--YLDGKRHAYFTLAPLQVEPVHLDPDINVYHGMLSSKQ- 338
            |.::...||.......:...:...|  |:       :.:.|:.:|.:...|.:.:|..::|.:| 
 Worm    49 WSTDQLELCDDETKDTKWQKNDSICITYV-------YNMLPVDMEIISWAPTLVIYRNLMSPRQT 106

  Fly   339 --ILSIFEEADKEEMVRSAVAGSGGEGTVRDLRVSQQTWLDYKSPVMNSVGRIIQF-----VSGF 396
              .|:..|:.|. |:.:::..|:..|.|.|....|      :..|..::|...|:.     :.|.
 Worm   107 ASFLNFIEQRDL-EIQKTSDFGTSIETTHRRANGS------FIPPEDSNVTVEIKMQAQKRIPGL 164

  Fly   397 DMAGAEHMQVANYGVGGQYEPHPDYFEVNLPKNFE------GDRISTSMFYLSDVEQGGYTVFTK 455
            ::..|||....:|..||.|..|.||.:....::::      |:||.|.:|.|...|:||.|||..
 Worm   165 NLTVAEHFSALSYLPGGHYAVHYDYLDYRSKQDYDWWMNKTGNRIGTLIFVLKPAEKGGGTVFPS 229

  Fly   456 LNVFLPPVKGALVMWHNLHRSLHVDARTLHAGCPVIVGSKRIGNIWMHS 504
            :...:....|....|.|.......:..:.|.|||:..|.|.|..||:.:
 Worm   230 IGSTVRANAGDAFFWFNAQADEEKEMLSNHGGCPIYEGRKVIATIWIRA 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaSG2NP_651801.1 P4Ha_N 28..163 CDD:285528
P4Hc 335..503 CDD:214780 49/181 (27%)
phy-3NP_507251.2 P4Hc 102..277 CDD:214780 49/181 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

Return to query results.
Submit another query.