DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaEFB and p4ha3

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_021322008.1 Gene:p4ha3 / 563281 ZFINID:ZDB-GENE-041010-4 Length:616 Species:Danio rerio


Alignment Length:549 Identity:196/549 - (35%)
Similarity:287/549 - (52%) Gaps:43/549 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAADWRLMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYIRVQEDKLNFLKNKMD 65
            |.:.:.|.::| .||.:...:.||::|::..:.:.:..|..||.:|..||..:..:|..:|....
Zfish     1 MCSCFTLFIVL-YLLNMPDESFGEMFTSMLSVNQAVSAERKLIDHLIIYIEHEAQRLEDIKRFFS 64

  Fly    66 EYQREHSDASHDITAYVSNPINAYLLTKRLTTDWRQVENLMEHDVGTDFLQNITQYRSL-LKFPS 129
            .....|....::.:..::|||.|:.|.|||.::|..|.:..|.:.....|:.  .||.: ...|.
Zfish    65 RVTSLHDGIYNEPSDPIANPIAAFKLVKRLKSEWLNVVHSTEAEENIKVLRE--DYRRMESSLPK 127

  Fly   130 DEDLNGAAVALLRLQDTYQLDTSSVARGKLNGI---------QYSTEMSSDDCFELGRQSYVNHD 185
            .|||.|||..|:||||.|.|...|:.||....|         ..|..:|.||||.:|:.:|...|
Zfish   128 LEDLRGAAHGLMRLQDVYNLHVESLVRGHFQQISDPVDFYKLSVSDMLSGDDCFLVGKVAYDLED 192

  Fly   186 YYHTVLWMNEAMARMLE----EPTNHTQSFTKADILEYLAFSTYKEGNIESALTMTNELLQLLPH 246
            |||:|||..||: |:..    .|.|..   |..|.|::||||.:|.|||..||:::.|||...|.
Zfish   193 YYHSVLWFEEAV-RLFRGTEWSPENEG---TLEDALDHLAFSHFKTGNISHALSLSRELLLHDPM 253

  Fly   247 HERANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTERRAYEMLCRGE-L 310
            :.|.:.|...|||.:              .:.:|.:...:....|....:..|.|||.||:.: .
Zfish   254 NRRVHFNVEKYEKLL--------------NENLPATSSGLTLKRPDGIYLRTRNAYEQLCQTKGS 304

  Fly   311 KPSPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKRMARPRFRRAT 375
            :|...:..||.|.|.||..|.|.|.|::.|.:...||:|::|..:..:|...|::.|.|..||:.
Zfish   305 QPKHFENPSLFCDYFTNGSPALFLQPIRREIISLQPYVVLFHGFVTQAEAKNIRKYAMPGLRRSV 369

  Fly   376 VQNSVTGALETANYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDS--AEELQVVNYGIGGHYE 438
            |.:.:..|  ||.||||||||||.....|:..:.||...:|||::..  ||.|||||||||||||
Zfish   370 VASGMNQA--TAEYRISKSAWLKESAHEVVGKLDQRITLVTGLNVQPPYAEYLQVVNYGIGGHYE 432

  Fly   439 PHFDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNLHRDG 503
            ||||.|..:....:. |..|||:||::.|:|.|:.||:|.|...:.::...:..|.||.|||::|
Zfish   433 PHFDHATSDSSPLYR-LKTGNRVATIMIYLSPVQAGGSTAFIYANFSVPVVQNAALFWWNLHKNG 496

  Fly   504 QGDVRTRHAACPVLTGTKW--VSNKWIHE 530
            ||:|.|.||.|||:.|.||  ..||..|:
Zfish   497 QGNVDTLHAGCPVIVGNKWGMFKNKNFHK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 40/131 (31%)
P4Hc 356..529 CDD:214780 80/176 (45%)
p4ha3XP_021322008.1 P4Ha_N 27..157 CDD:311993 40/131 (31%)
P4Hc 350..519 CDD:214780 78/171 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583394
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52324
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.860

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