DRSC/TRiP Functional Genomics Resources

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Protein Alignment PH4alphaEFB and p4ha2

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_012814344.2 Gene:p4ha2 / 493342 XenbaseID:XB-GENE-957618 Length:537 Species:Xenopus tropicalis


Alignment Length:522 Identity:249/522 - (47%)
Similarity:339/522 - (64%) Gaps:10/522 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 EVYTALAEMEELLETESVLITNLEGYIRVQEDKLNFLKNKMDEYQREHSDASHDITAYVSNPINA 88
            ||:|:..:|.:|:..|..|:.:|:.|||.:|::|:.:|....|.....|.::.|...|:.:|:||
 Frog    22 EVFTSTGQMTDLIFRERDLLQSLKEYIREEEERLSKIKRWASEVDELSSRSTADPEGYLGHPVNA 86

  Fly    89 YLLTKRLTTDWRQVENLMEHDVGTDFLQNITQYRSLLKFPSDEDLNGAAVALLRLQDTYQLDTSS 153
            |.|.||..|||..:|||:..|....|:.|.|..|..  ||::||..|||.||:|:||||:||...
 Frog    87 YKLVKRFNTDWSSLENLVLQDSAKGFIANFTFQREY--FPTEEDETGAARALMRIQDTYKLDPDV 149

  Fly   154 VARGKLNGIQYSTEMSSDDCFELGRQSYVNHDYYHTVLWMNEAMARMLEEPTNHTQSFTKADILE 218
            :|:|||.|..|.:.:|:||.|.:|:.:|.:.|||||||||.:|:.:|.|   .......|.|:|:
 Frog   150 IAKGKLPGTNYISSLSADDSFGMGKIAYHDGDYYHTVLWMQQALKQMDE---GEDAVVNKVDVLD 211

  Fly   219 YLAFSTYKEGNIESALTMTNELLQLLPHHERANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSD 283
            ||:::.::.|::..||.:|..||.|.|:|:||..|.:::||  .|:.|..::|.::.|:....:.
 Frog   212 YLSYTVFQLGDVPRALELTKRLLALDPNHDRAVNNLKYFEK--MQEKQKAELKQNESTNTESATR 274

  Fly   284 LPVAKSDPAIFDMTERRAYEMLCRGE-LKPSPSDLRSLRCRYVT-NRVPFLRLGPLKLEEVHADP 346
            .|...|.|..: :.||..||.||||| :|.:|...|.|.|||.. ||.|:|.|.|:|:|:....|
 Frog   275 QPGVYSRPLDY-LPERDVYEALCRGEGVKMNPRRQRRLFCRYHNGNRSPYLILSPVKVEDEWDSP 338

  Fly   347 YIVIYHDAMYDSEIDLIKRMARPRFRRATVQNSVTGALETANYRISKSAWLKTQEDRVIETVVQR 411
            .||.|.:|:.|.||..||.:|:|:..||||::..||.|..||||:||||||:..:|.||..|..|
 Frog   339 RIVRYLNALSDEEIAKIKELAKPKLARATVRDPKTGVLSVANYRVSKSAWLEENDDPVIARVNLR 403

  Fly   412 TADMTGLDMDSAEELQVVNYGIGGHYEPHFDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGA 476
            ...:|||.:|:||.|||.|||:||.|||||||:||:|...|:.|..|||:||.|.||||||.|||
 Frog   404 MQAITGLTVDTAELLQVANYGMGGQYEPHFDFSRKDEPDVFKRLGTGNRVATFLNYMSDVEAGGA 468

  Fly   477 TVFTSLHTALFPKKGTAAFWMNLHRDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPCDL 541
            |||.....|::||||||.||.||.|.|:||.||||||||||.|:|||||||.|||||||.|||.|
 Frog   469 TVFPDFGAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGSKWVSNKWFHERGQEFLRPCGL 533

  Fly   542 EE 543
            .|
 Frog   534 TE 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 51/130 (39%)
P4Hc 356..529 CDD:214780 106/172 (62%)
p4ha2XP_012814344.2 P4Ha_N 27..113 CDD:400573 29/85 (34%)
TPR repeat 166..201 CDD:276809 17/37 (46%)
TPR repeat 206..236 CDD:276809 11/29 (38%)
P4Hc 348..521 CDD:214780 106/172 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 207 1.000 Domainoid score I2817
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 505 1.000 Inparanoid score I1308
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 1 1.000 - - otm47957
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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