DRSC/TRiP Functional Genomics Resources

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Protein Alignment PH4alphaEFB and PH4alphaNE2

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_733378.1 Gene:PH4alphaNE2 / 43628 FlyBaseID:FBgn0039783 Length:542 Species:Drosophila melanogaster


Alignment Length:554 Identity:170/554 - (30%)
Similarity:271/554 - (48%) Gaps:52/554 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WRLMLLLGILLLV-------GGPANGEVYTALAEMEELLETESVLITNLEGYIRVQEDKLNFLK- 61
            ||| :|||:|.|.       ...|......::..|:::|..|..|::|:|........|...:| 
  Fly     4 WRL-VLLGMLYLSLSFGQLRENNAQQRFARSVVNMDDMLNLEDDLVSNVEKLAEALARKAKTIKW 67

  Fly    62 --NKMDEYQREHSDASHDITAYVSNPINAYLLTKRLTTDWRQVENLMEHDVGTDFLQNITQYRSL 124
              .||.:.::|:. :|.:|.|   |||:.:.|.:.:.::|......:|..||.:.|..:.....|
  Fly    68 GVFKMMKRRQEYK-SSMEIFA---NPIDTFSLIRHMQSNWLMWLLYLETPVGQEELFFVDSRMPL 128

  Fly   125 LKFPSDEDLNGAAVALLRLQDTYQLDTSSVARGKLNGIQYSTEMSSDDCFELGRQSYVNHDYYHT 189
            |  |...|...||..:.::|.|||:.:|.:|:|.|:|:||::.:...||..:|.....|..:|..
  Fly   129 L--PKYFDFIDAAEGIRKMQATYQMFSSDIAKGLLDGVQYNSSLKPIDCLAIGLHLMNNSRWYAA 191

  Fly   190 VLWMNEAMARMLEEPTNHTQSFTK----ADILEYLAFSTYKEGNIESALTMTNELLQLLPHHERA 250
            ..|::.::....::.:.......:    ||:...|.....|:.|.|.||......|:|.||    
  Fly   192 EQWISASIEAYDQKSSQTDMELLRGPKLADLCRILGQVQMKQRNHEGALQAYQVALKLSPH---- 252

  Fly   251 NGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMT---ERRAYEMLCRGELKP 312
                   :.||.::.::           :.|.||.::..:|...|..   ||......|.|..: 
  Fly   253 -------DPEIYEEYRI-----------LEKRDLTLSDIEPIEQDKDNSHERLVLPPCCSGRCQ- 298

  Fly   313 SPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKRMARPRFRRATVQ 377
            .|.:|.:|.|.|.....|||:|.|:|.|.:..||::|:.||.:...|..||:..::.....:...
  Fly   299 VPRNLSNLYCVYNHVTSPFLQLAPIKTEILSIDPFVVLLHDMISQKESTLIRTSSKEHMLPSATT 363

  Fly   378 NSVTGALETA--NYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDSAEELQVVNYGIGGHYEPH 440
            :......||.  .||.|||.|..:..:...:.:.:|..|.|||||:|.|..||:|||:||.:|.|
  Fly   364 DPDASDDETQVDTYRTSKSVWYSSDFNDTTKKITERLGDATGLDMNSTEFYQVINYGLGGFFETH 428

  Fly   441 FDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNLHRDGQG 505
            .|....|:.| |.|.:  :||||.|||:::|.|||.|.|..|:..:||:.|:|.||.||...|..
  Fly   429 LDMLLSEKNR-FNGTS--DRIATTLFYLNEVRQGGGTYFPRLNLTVFPQPGSALFWYNLDTKGND 490

  Fly   506 DVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPC 539
            .:.:.|..|||:.|:|||.:|||::.||||.|||
  Fly   491 HMGSLHTGCPVIVGSKWVMSKWINDMGQEFTRPC 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 36/133 (27%)
P4Hc 356..529 CDD:214780 67/174 (39%)
PH4alphaNE2NP_733378.1 P4Ha_N 33..161 CDD:285528 36/133 (27%)
TPR repeat 175..200 CDD:276809 5/24 (21%)
TPR_16 176..254 CDD:290168 16/88 (18%)
TPR repeat 219..249 CDD:276809 9/29 (31%)
TPR_2 220..253 CDD:285020 12/43 (28%)
P4Hc 342..513 CDD:214780 66/173 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461815
Domainoid 1 1.000 91 0.514 Domainoid score I2609
eggNOG 1 0.900 - - E1_KOG1591
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 1 1.000 - - mtm1209
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
109.900

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