DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaEFB and P4ha2

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_006532515.1 Gene:P4ha2 / 18452 MGIID:894286 Length:557 Species:Mus musculus


Alignment Length:571 Identity:253/571 - (44%)
Similarity:345/571 - (60%) Gaps:60/571 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYIRVQEDKLNFLKNKMDEYQREH 71
            ||...|:|..|    ..|.:|::..|.:|:..|..|:.:|:.||.|:|.||..:|:...:.:...
Mouse    11 LMSWFGVLSWV----QAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLAKIKSWASKMEALT 71

  Fly    72 SDASHDITAYVSNPINAYLLTKRLTTDWRQVENLMEHDVGTDFLQNITQYRSLLKFPSDEDLNGA 136
            |.::.|...|:::|:|||.|.|||.|||..:.:|:..|....|:.|::..|..  ||:|||.:||
Mouse    72 SRSAADPEGYLAHPVNAYKLVKRLNTDWPALGDLVLQDASAGFVANLSVQRQF--FPTDEDESGA 134

  Fly   137 AVALLRLQDTYQLDTSSVARGKLNGIQYSTEMSSDDCFELGRQSYVNHDYYHTVLWMNEAMARM- 200
            |.||:||||||:||..:::||:|.|.:|...:|.||||.|||.:|...|||||||||.:.:.:: 
Mouse   135 ARALMRLQDTYKLDPDTISRGELPGTKYQAMLSVDDCFGLGRSAYNEGDYYHTVLWMEQVLKQLD 199

  Fly   201 -LEEPTNHTQSFTKADILEYLAFSTYKEGNIESALTMTNELLQLLPHHERANGNKRFYEKEIAQQ 264
             .||.|     .||:.:|:||:::.::.|::..|:.:|..||.|.|.||||.||.|::|:.:.::
Mouse   200 AGEEAT-----VTKSLVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLRYFERLLEEE 259

  Fly   265 LQLRKMKGDDGTD----------EMPKSDLPVAKSDPAIFDMTERRAYEMLCRGE-LKPSPSDLR 318
               |.....:.||          |.|...||            ||..||.||||| :|.:|...:
Mouse   260 ---RGKSLSNQTDAGLATQENLYERPTDYLP------------ERDVYESLCRGEGVKLTPRRQK 309

  Fly   319 SLRCRY-VTNRVPFLRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKRMARPRFRRATVQNSVTG 382
            .|.||| ..||||.|.:.|.|.|:....|:||.|:|.|.|.||:.||.:|:|:..||||::..||
Mouse   310 KLFCRYHHGNRVPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTG 374

  Fly   383 ALETANYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDSAEELQVVNYGIGGHYEPHFDFARK- 446
            .|..|:||:|||:||:..:|.|:..|.:|...:|||.:.:||.|||.|||:||.|||||||:|: 
Mouse   375 VLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRRP 439

  Fly   447 -------------------EEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGT 492
                               :||.||:.|..|||:||.|.||||||.||||||..|..|::|||||
Mouse   440 FDSGLKTEGNRLATFLNYSDEQDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGT 504

  Fly   493 AAFWMNLHRDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPCDLEE 543
            |.||.||.|.|:||.||||||||||.|.|||||||.|||||||.|||...|
Mouse   505 AVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGTTE 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 51/130 (39%)
P4Hc 356..529 CDD:214780 104/192 (54%)
P4ha2XP_006532515.1 P4Ha_N 28..157 CDD:369820 51/130 (39%)
P4Hc 348..541 CDD:214780 104/192 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 215 1.000 Domainoid score I2702
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 512 1.000 Inparanoid score I1297
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52324
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 1 1.000 - - otm42846
orthoMCL 1 0.900 - - OOG6_100878
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2705
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.870

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