DRSC/TRiP Functional Genomics Resources

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Protein Alignment PH4alphaEFB and LOC110438249

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_021324927.1 Gene:LOC110438249 / 110438249 -ID:- Length:229 Species:Danio rerio


Alignment Length:230 Identity:119/230 - (51%)
Similarity:149/230 - (64%) Gaps:11/230 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 SPSDLRSLRCRYVTNRVPFLRLGPLKL--EEVHAD-PYIVIYHDAMYDSEIDLIKRMARPRFRRA 374
            :|...|.|.|||...|.     .||.|  |||..| |.|:.|||.:.:.|||.||.:|||:..||
Zfish     2 TPQRERKLVCRYRRGRG-----NPLMLFKEEVEWDQPMILRYHDFLSEGEIDTIKTLARPKLSRA 61

  Fly   375 TVQNSVTGALETANYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDSAEELQVVNYGIGGHYEP 439
            .|.::|:|...:|..|:|:||||...||.|:..|.||.||:|||::.:||.||:.||||||.|||
Zfish    62 QVIDAVSGKRVSAASRVSQSAWLYEDEDPVVTQVNQRIADVTGLELQTAESLQIANYGIGGQYEP 126

  Fly   440 HFDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNLHRDGQ 504
            |:| ::......|:  ..|.||||||.|||||:.||||||..:..||.||:|:|..|.||.|:|.
Zfish   127 HYD-SKLTNDSDFQ--LRGGRIATVLIYMSDVDIGGATVFPDVGAALQPKRGSAVLWFNLLRNGN 188

  Fly   505 GDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPC 539
            .|:||.||||||..|:|||:||||...||||||.|
Zfish   189 EDIRTLHAACPVFVGSKWVANKWIRTYGQEFRRKC 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528
P4Hc 356..529 CDD:214780 92/172 (53%)
LOC110438249XP_021324927.1 PLN00052 28..218 CDD:177683 101/192 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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