DRSC/TRiP Functional Genomics Resources

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Protein Alignment PH4alphaEFB and p4ha3

DIOPT Version :9

Sequence 1:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_031752143.1 Gene:p4ha3 / 100495824 XenbaseID:XB-GENE-962355 Length:547 Species:Xenopus tropicalis


Alignment Length:566 Identity:204/566 - (36%)
Similarity:294/566 - (51%) Gaps:68/566 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WRLMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYIRVQEDKLNFLKNKMDEYQR 69
            |.|:|.:..|..:  .|..::|:::|.:::.:..|..|:.:|..|::.:..:|:.|:...::.|.
 Frog    13 WPLLLCVSWLHWL--HAGADMYSSMASIQQAVGMEGALLQHLGQYLQQETQRLSDLRRFYEKVQA 75

  Fly    70 EHSDASHDITAYVSNPINAYLLTKRLTTDWRQVENLMEHDVGTDFLQNITQYRSLLK--FPSDED 132
            .|......    |.:||.||.|.|||.::|.   |::......:.:|.:.:....:|  .|:.||
 Frog    76 SHQAGGPP----VQDPILAYTLLKRLQSEWM---NVVHSSEANENIQALKEGYEKVKQDLPAPED 133

  Fly   133 LNGAAVALLRLQDTYQLDTSSVARGK-----------LNGIQYSTEMSSDDCFELGRQSYVNHDY 186
            :.|||.||:||||.|.|:.:.:|||.           |....:.:.||:||||.:|:.:|...||
 Frog   134 VEGAAKALMRLQDVYSLNVNGLARGMFQRSSSSDTKLLYNPPHLSIMSADDCFHIGKVAYDMEDY 198

  Fly   187 YHTVLWMNEAMARM--------------LEEPTNHTQSFTKADILEYLAFSTYKEGNIESALTMT 237
            ||::.|:.||::|.              |||            .|:|||||.||.|||..||.::
 Frog   199 YHSIPWLEEAVSRFRGSYGNWRTEDEGSLEE------------ALDYLAFSYYKAGNISHALDLS 251

  Fly   238 NELLQLLPHHERANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTERRAY 302
            .|.|...|.:.|...|...||     |:.......|...:||       ....|.:..:..|..|
 Frog   252 RECLLYDPDNGRLARNIAKYE-----QILYESPTADADAEEM-------KLQRPNVTHLKTRDLY 304

  Fly   303 EMLCR--GELKPSPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKR 365
            |.||:  |. :|:..:...:.|.|.||..|:|.|.|:|.|.|...|.:|:|||.:.|.|.:.||.
 Frog   305 EGLCQTLGS-QPTSYEDPHMSCMYDTNSHPYLLLQPMKKEIVSLRPQVVLYHDFVSDLEAEKIKE 368

  Fly   366 MARPRFRRATVQNSVTGALETANYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDS--AEELQV 428
            :|.|...|:.|.:....|  .|.||||||||||......::.:..|.:.:|||:...  ||.|||
 Frog   369 LASPWLHRSVVASGEKQA--EAEYRISKSAWLKDTIHPFVQNLDTRISAVTGLNAHPPYAEYLQV 431

  Fly   429 VNYGIGGHYEPHFDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTA 493
            ||||||||||||||.|...:...:. .|.|||:||.:.|:|.|:.||:|.|...:.:....|..|
 Frog   432 VNYGIGGHYEPHFDHATSRKSPLYR-TNTGNRLATFMIYLSHVDLGGSTAFVFANFSSPVVKNAA 495

  Fly   494 AFWMNLHRDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPC 539
            .||.||||:|.||..|.||.|||:.|:|||:||||||.||||.|||
 Frog   496 VFWWNLHRNGLGDEDTLHAGCPVIIGSKWVANKWIHEFGQEFHRPC 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 39/143 (27%)
P4Hc 356..529 CDD:214780 81/174 (47%)
p4ha3XP_031752143.1 P4Ha_N 35..>104 CDD:400573 19/75 (25%)
TPR repeat 182..210 CDD:276809 13/27 (48%)
TPR repeat 215..257 CDD:276809 18/53 (34%)
P4Hc 359..531 CDD:214780 81/174 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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