DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2224 and AMSH2

DIOPT Version :10

Sequence 1:NP_651796.1 Gene:CG2224 / 43617 FlyBaseID:FBgn0039773 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_172530.2 Gene:AMSH2 / 837603 AraportID:AT1G10600 Length:223 Species:Arabidopsis thaliana


Alignment Length:217 Identity:83/217 - (38%)
Similarity:128/217 - (58%) Gaps:8/217 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 PAASEAAADKTTNSKPSFDR---NQKPSYNRTDSLLAGSLRLVYVPGDTMEVFLKLALANTSKNI 272
            |:.|.:..:..|.......|   :...:.|..:|..|..||.|::....:|.|.:||..||.|::
plant     7 PSPSLSCVENVTCKSSHVSRVLISGTDNINHGESSEAKILRDVHISERLLEDFTELARENTEKDL 71

  Fly   273 ETCGVLAGHLSQNQLYITHIITPQQQGTPDSCNTMHEEQIFDVQDQMQLITLGWIHTHPTQTAFL 337
            ||||.||..|.:...|:|.:|.|:|:.|.:||..|:|.::|.:|::.:|..:|||||||:|..|:
plant    72 ETCGTLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSIQNERELYPVGWIHTHPSQGCFM 136

  Fly   338 SSVDLHTHCSYQIMMPEALAIVCAP--KYNTTGFFILTPHYGLDYIAQCRQSGFHPH--PND-PP 397
            ||||||||.|||:|:|||.|||.||  ...:.|.|.||...|::.:..|.::|||||  |.| .|
plant   137 SSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNP 201

  Fly   398 LFMEAQHIRMDNQAKIKVIDLR 419
            ::....::..::..:.::.|||
plant   202 VYEHCSNVYKNSNLRFEIFDLR 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2224NP_651796.1 USP8_dimer 11..120 CDD:462647
MPN_AMSH_like 247..419 CDD:163697 74/176 (42%)
AMSH2NP_172530.2 MPN_AMSH_like 46..223 CDD:163697 74/176 (42%)
Blue background indicates that the domain is not in the aligned region.

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