DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2224 and AT5G23540

DIOPT Version :10

Sequence 1:NP_651796.1 Gene:CG2224 / 43617 FlyBaseID:FBgn0039773 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_197745.1 Gene:AT5G23540 / 832420 AraportID:AT5G23540 Length:308 Species:Arabidopsis thaliana


Alignment Length:134 Identity:33/134 - (24%)
Similarity:65/134 - (48%) Gaps:18/134 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 DTME-VFL-KLALANTSKN------IETCGVLAGH-LSQNQLYITHIITPQQQGTPDSCNTMHEE 310
            ||.| |:: .|||....|:      :|..|::.|. :.:..:.:..:....|.||..|...:  :
plant    25 DTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAV--D 87

  Fly   311 QIF--DVQDQMQL-----ITLGWIHTHPTQTAFLSSVDLHTHCSYQIMMPEALAIVCAPKYNTTG 368
            .:|  ::.|.::.     :.:||.|:||....:||.||::|..|::.:...|:|:|..|..:..|
plant    88 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKG 152

  Fly   369 FFIL 372
            ..::
plant   153 KVVI 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2224NP_651796.1 USP8_dimer 11..120 CDD:462647
MPN_AMSH_like 247..419 CDD:163697 33/134 (25%)
AT5G23540NP_197745.1 MPN_RPN11_CSN5 19..285 CDD:163700 33/134 (25%)
Blue background indicates that the domain is not in the aligned region.

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